Re-build examples

UofUEpiBio · Aug 19, 2024 · 9116e32 · 9116e32
1 parent a95475e
commit 9116e32
Showing 1 changed file with 11 additions and 11 deletions.
diff --git a/README.md b/README.md
@@ -10,21 +10,21 @@ issues associated with them.
 
 | Week | Title | Lecture | Lab |
 |:---|:---|:---|:---|
-| 8/20 and 8/22 | Intro to Git + Intro to classes (Issue [3](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/3)) + [quarto](https://UofUEpiBio.github.io/PHS7045-advanced-programming/quarto.html) ([source](lectures/01-git/quarto.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-01-slides.html) ([source](lectures/01-git/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-01-lab.html) ([source](labs/01-git/01-git.qmd)) |
-| 8/27 and 8/29 | R Essentials (Issue [4](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/4)) + [Homework 1](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-02-slides.html) ([source](lectures/02-essentials/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-02-lab.html) ([source](labs/02-essentials/02-essentials.qmd)) |
-| 9/03 and 9/5 | Debugging and profiling (Issue [7](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/7)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-03-slides.html) ([source](lectures/04-debugging-and-profiling/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-03-lab.html) ([source](labs/04-debugging-and-profiling/04-debugging-and-profiling.qmd)) |
-| 9/10 and 9/12 | Functions and data.table (Issue [5](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/5)) + [Homework 2](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-04-slides.html) ([source](lectures/03-more-functions-and-datatable/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-04-lab.html) ([source](labs/03-functions-and-datatable/03-functions-and-datatable.qmd)) |
+| 8/20 and 8/22 | Intro to Git + Intro to classes + [quarto](https://UofUEpiBio.github.io/PHS7045-advanced-programming/quarto.html) ([source](lectures/01-git/quarto.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-01-slides.html) ([source](lectures/01-git/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-01-lab.html) ([source](labs/01-git/01-git.qmd)) |
+| 8/27 and 8/29 | R Essentials + [Homework 1](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-02-slides.html) ([source](lectures/02-essentials/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-02-lab.html) ([source](labs/02-essentials/02-essentials.qmd)) |
+| 9/03 and 9/5 | Debugging and profiling | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-03-slides.html) ([source](lectures/04-debugging-and-profiling/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-03-lab.html) ([source](labs/04-debugging-and-profiling/04-debugging-and-profiling.qmd)) |
+| 9/10 and 9/12 | Functions and data.table + [Homework 2](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-04-slides.html) ([source](lectures/03-more-functions-and-datatable/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-04-lab.html) ([source](labs/03-functions-and-datatable/03-functions-and-datatable.qmd)) |
 | 9/17 and 9/19 | Introduction to C++ + Homework 3 (C++), Deliver a paragraph in abstract mode describing their projects for the midterm. |  |  |
-| 9/24 and 9/26 | C++ in R (Issue [8](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/8)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-06-slides.html) ([source](lectures/05-rcpp/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-06-lab.html) ([source](labs/05-rcpp/lab.qmd)) |
-| 10/01 and 10/03 | Parallel Computing (Issue [11](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/11)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-07-slides.html) ([source](lectures/06-parallel-computing/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-07-lab.html) ([source](labs/06-parallel-computing/lab.qmd)) |
+| 9/24 and 9/26 | C++ in R | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-06-slides.html) ([source](lectures/05-rcpp/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-06-lab.html) ([source](labs/05-rcpp/lab.qmd)) |
+| 10/01 and 10/03 | Parallel Computing | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-07-slides.html) ([source](lectures/06-parallel-computing/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-07-lab.html) ([source](labs/06-parallel-computing/lab.qmd)) |
 | 10/08 and 10/10 | Fall Break |  |  |
 | 10/15 and 10/17 (presentations) | Midterm project |  |  |
 | 10/22 and 10/24 | UofU’s CHPC + Homework 4 (Slurm) |  |  |
-| 10/29 and 10/31 | Slurm (Issue [16](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/16)) |  | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-11-lab.html) ([source](labs/08-openmp-slurm/lab.qmd)) |
-| 11/05 and 11/07 | R packages I (Issue [12](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/12)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-12-slides.html) ([source](lectures/07-rpkgs-i/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-12-lab.html) ([source](labs/07-rpkgs-i/lab.qmd)) |
-| 11/12 and 11/14 | R packages II (Issue [12](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/12)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-13-slides.html) ([source](lectures/07-rpkgs-i/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-13-lab.html) ([source](labs/07-rpkgs-i/lab.qmd)) |
-| 11/19 and 11/21 | Automatic Reports with GitHub Actions (Issue [19](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/19)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-14-slides.html) ([source](lectures/99-autoreport/slides.qmd)) |  |
-| 11/26 and 11/28 (off) | More practice with slurm (and netplot) (Issue [17](https://github.com/UofUEpiBio/PHS7045-advanced-programming/issues/17)) |  | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-15-lab.html) ([source](labs/09-slurm-practice/lab.qmd)) |
+| 10/29 and 10/31 | Slurm |  | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-11-lab.html) ([source](labs/08-openmp-slurm/lab.qmd)) |
+| 11/05 and 11/07 | R packages I | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-12-slides.html) ([source](lectures/07-rpkgs-i/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-12-lab.html) ([source](labs/07-rpkgs-i/lab.qmd)) |
+| 11/12 and 11/14 | R packages II | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-13-slides.html) ([source](lectures/07-rpkgs-i/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-13-lab.html) ([source](labs/07-rpkgs-i/lab.qmd)) |
+| 11/19 and 11/21 | Automatic Reports with GitHub Actions | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-14-slides.html) ([source](lectures/99-autoreport/slides.qmd)) |  |
+| 11/26 and 11/28 (off) | More practice with slurm (and netplot) |  | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-15-lab.html) ([source](labs/09-slurm-practice/lab.qmd)) |
 | 12/03 and 12/05 | Final Prep (Hackathon) |  |  |
 | 12/12 | Final |  |  |