Feat: weighted average table metrics #13748

Workflow file for this run

	name: CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]
	merge_group:
	branches: [ main ]

	permissions:
	id-token: write
	contents: read

	jobs:
	setup:
	strategy:
	matrix:
	python-version: ["3.9","3.10","3.11", "3.12"]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/base-cache
	with:
	python-version: ${{ matrix.python-version }}
	check-only: 'true'

	check-deps:
	strategy:
	matrix:
	python-version: ["3.9","3.10","3.11", "3.12"]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Check for dependency conflicts
	run: make check-deps

	check-extras:
	strategy:
	matrix:
	python-version: [ "3.9","3.10","3.11","3.12" ]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install all extras
	run: make check-extras

	lint:
	strategy:
	matrix:
	python-version: ["3.9","3.10","3.11"]
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	runs-on: ubuntu-latest
	needs: [setup, changelog]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup virtual environment
	uses: ./.github/actions/base-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Lint
	run: \|
	source .venv/bin/activate
	make check

	shellcheck:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: ShellCheck
	uses: ludeeus/action-shellcheck@master

	shfmt:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: setup shfmt
	uses: mfinelli/setup-shfmt@v3
	- name: Run shfmt
	run: shfmt -i 2 -d .


	test_unit:
	strategy:
	matrix:
	python-version: ["3.9","3.10","3.11", "3.12"]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup, lint]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup virtual environment
	uses: ./.github/actions/base-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Test
	env:
	UNS_API_KEY: ${{ secrets.UNS_API_KEY }}
	TESSERACT_VERSION : "5.4.1"
	run: \|
	source .venv/bin/activate
	sudo apt-get update
	sudo apt-get install -y libmagic-dev poppler-utils libreoffice
	sudo add-apt-repository -y ppa:alex-p/tesseract-ocr5
	sudo apt-get update
	sudo apt-get install -y tesseract-ocr tesseract-ocr-kor
	tesseract --version
	installed_tesseract_version=$(tesseract --version \| grep -oP '(?<=tesseract )\d+\.\d+\.\d+')
	if [ "$installed_tesseract_version" != "${{env.TESSERACT_VERSION}}" ]; then
	echo "Tesseract version ${{env.TESSERACT_VERSION}} is required but found version $installed_tesseract_version"
	exit 1
	fi
	# FIXME (yao): sometimes there is cache but we still miss argilla in the env; so we add make install-ci again
	make install-ci
	make test CI=true UNSTRUCTURED_INCLUDE_DEBUG_METADATA=true
	make check-coverage

	test_chipper:
	strategy:
	matrix:
	python-version: ["3.10"]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	UNSTRUCTURED_HF_TOKEN: ${{ secrets.HF_TOKEN }}
	needs: [setup, lint]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup virtual environment
	uses: ./.github/actions/base-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Test
	env:
	UNS_API_KEY: ${{ secrets.UNS_API_KEY }}
	run: \|
	source .venv/bin/activate
	sudo apt-get update
	sudo apt-get install -y poppler-utils
	make install-pandoc install-test
	sudo add-apt-repository -y ppa:alex-p/tesseract-ocr5
	sudo apt-get update
	sudo apt-get install -y tesseract-ocr tesseract-ocr-kor
	tesseract --version
	make test-chipper CI=true UNSTRUCTURED_INCLUDE_DEBUG_METADATA=true

	test_unit_no_extras:
	strategy:
	matrix:
	python-version: ["3.10"]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup, lint]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup virtual environment
	uses: ./.github/actions/base-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Test
	env:
	UNS_API_KEY: ${{ secrets.UNS_API_KEY }}
	run: \|
	source .venv/bin/activate
	make test-no-extras CI=true

	test_unit_dependency_extras:
	# NOTE(newelh) - Split extras into separate steps in the same pipeline (avoid using matrix)
	strategy:
	matrix:
	python-version: ["3.10"]
	extra: ["csv", "docx", "odt", "markdown", "pypandoc", "msg", "pdf-image", "pptx", "xlsx"]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup, lint, test_unit_no_extras]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- uses: actions/cache/restore@v4
	id: virtualenv-cache
	with:
	path: \|
	nltk_data
	key: unstructured-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('requirements/*.txt') }}
	- name: Setup virtual environment
	run: \|
	python${{ matrix.python-version}} -m venv .venv-${{ matrix.extra }}
	source .venv-${{ matrix.extra }}/bin/activate
	make install-base-ci
	make install-${{ matrix.extra }}
	- name: Test
	env:
	UNS_API_KEY: ${{ secrets.UNS_API_KEY }}
	UNSTRUCTURED_HF_TOKEN: ${{ secrets.HF_TOKEN }}
	run: \|
	source .venv-${{ matrix.extra }}/bin/activate
	# NOTE(newelh) - determine what needs to be installed here
	sudo apt-get update
	sudo apt-get install -y libmagic-dev poppler-utils libreoffice
	make install-pandoc
	sudo add-apt-repository -y ppa:alex-p/tesseract-ocr5
	sudo apt-get update
	sudo apt-get install -y tesseract-ocr tesseract-ocr-kor
	tesseract --version
	make test-extra-${{ matrix.extra }} CI=true

	setup_ingest:
	strategy:
	matrix:
	python-version: [ "3.9","3.10" ]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup]
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/base-ingest-cache
	with:
	python-version: ${{ matrix.python-version }}

	test_ingest_unit:
	strategy:
	matrix:
	python-version: [ "3.9","3.10" ]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [ setup_ingest, lint ]
	steps:
	# actions/checkout MUST come before auth
	- uses: 'actions/checkout@v4'
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Get full Python version
	id: full-python-version
	run: echo version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") >> $GITHUB_OUTPUT
	- name: Setup virtual environment
	uses: ./.github/actions/base-ingest-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Test Ingest (unit)
	run: \|
	source .venv/bin/activate
	PYTHONPATH=. pytest test_unstructured_ingest/unit


	test_ingest_src:
	strategy:
	matrix:
	python-version: ["3.9","3.10"]
	runs-on: ubuntu-latest-m
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup_ingest, lint]
	steps:
	# actions/checkout MUST come before auth
	- uses: 'actions/checkout@v4'
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Get full Python version
	id: full-python-version
	run: echo version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") >> $GITHUB_OUTPUT
	- name: Setup virtual environment
	uses: ./.github/actions/base-ingest-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup docker-compose
	uses: KengoTODA/actions-setup-docker-compose@v1
	with:
	version: '2.22.0'
	- name: Test (end-to-end)
	env:
	AIRTABLE_PERSONAL_ACCESS_TOKEN: ${{ secrets.AIRTABLE_PERSONAL_ACCESS_TOKEN }}
	BOX_APP_CONFIG: ${{ secrets.BOX_APP_CONFIG }}
	CONFLUENCE_API_TOKEN: ${{ secrets.CONFLUENCE_API_TOKEN }}
	CONFLUENCE_USER_EMAIL: ${{ secrets.CONFLUENCE_USER_EMAIL }}
	DISCORD_TOKEN: ${{ secrets.DISCORD_TOKEN }}
	DROPBOX_APP_KEY: ${{ secrets.DROPBOX_APP_KEY }}
	DROPBOX_APP_SECRET: ${{ secrets.DROPBOX_APP_SECRET }}
	DROPBOX_REFRESH_TOKEN: ${{ secrets.DROPBOX_REFRESH_TOKEN }}
	GCP_INGEST_SERVICE_KEY: ${{ secrets.GCP_INGEST_SERVICE_KEY }}
	GH_READ_ONLY_ACCESS_TOKEN: ${{ secrets.GH_READ_ONLY_ACCESS_TOKEN }}
	HUBSPOT_API_TOKEN: ${{ secrets.HUBSPOT_API_TOKEN }}
	JIRA_INGEST_API_TOKEN: ${{ secrets.JIRA_INGEST_API_TOKEN }}
	JIRA_INGEST_USER_EMAIL: ${{ secrets.JIRA_INGEST_USER_EMAIL }}
	MONGODB_URI: ${{ secrets.MONGODB_URI }}
	MONGODB_DATABASE_NAME: ${{ secrets.MONGODB_DATABASE_NAME }}
	MS_CLIENT_CRED: ${{ secrets.MS_CLIENT_CRED }}
	MS_CLIENT_ID: ${{ secrets.MS_CLIENT_ID }}
	MS_TENANT_ID: ${{ secrets.MS_TENANT_ID }}
	MS_USER_EMAIL: ${{ secrets.MS_USER_EMAIL }}
	MS_USER_PNAME: ${{ secrets.MS_USER_PNAME }}
	SALESFORCE_USERNAME: ${{secrets.SALESFORCE_USERNAME}}
	SALESFORCE_CONSUMER_KEY: ${{secrets.SALESFORCE_CONSUMER_KEY}}
	SALESFORCE_PRIVATE_KEY: ${{secrets.SALESFORCE_PRIVATE_KEY}}
	SHAREPOINT_CLIENT_ID: ${{secrets.SHAREPOINT_CLIENT_ID}}
	SHAREPOINT_CRED: ${{secrets.SHAREPOINT_CRED}}
	SHAREPOINT_SITE: ${{secrets.SHAREPOINT_SITE}}
	SHAREPOINT_PERMISSIONS_APP_ID: ${{secrets.SHAREPOINT_PERMISSIONS_APP_ID}}
	SHAREPOINT_PERMISSIONS_APP_CRED: ${{secrets.SHAREPOINT_PERMISSIONS_APP_CRED}}
	SHAREPOINT_PERMISSIONS_TENANT: ${{secrets.SHAREPOINT_PERMISSIONS_TENANT}}
	SLACK_TOKEN: ${{ secrets.SLACK_TOKEN }}
	UNS_API_KEY: ${{ secrets.UNS_API_KEY }}
	NOTION_API_KEY: ${{ secrets.NOTION_API_KEY }}
	AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
	AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
	AZURE_SEARCH_ENDPOINT: ${{ secrets.AZURE_SEARCH_ENDPOINT }}
	AZURE_SEARCH_API_KEY: ${{ secrets.AZURE_SEARCH_API_KEY }}
	OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
	OCTOAI_API_KEY: ${{ secrets.OCTOAI_API_KEY }}
	PINECONE_API_KEY: ${{secrets.PINECONE_API_KEY}}
	TABLE_OCR: "tesseract"
	OCR_AGENT: "unstructured.partition.utils.ocr_models.tesseract_ocr.OCRAgentTesseract"
	CI: "true"
	run: \|
	source .venv/bin/activate
	sudo apt-get update
	sudo apt-get install -y libmagic-dev poppler-utils libreoffice
	make install-pandoc
	sudo add-apt-repository -y ppa:alex-p/tesseract-ocr5
	sudo apt-get update
	sudo apt-get install -y tesseract-ocr
	sudo apt-get install -y tesseract-ocr-kor
	sudo apt-get install diffstat
	tesseract --version
	./test_unstructured_ingest/test-ingest-src.sh


	test_ingest_dest:
	environment: ci
	strategy:
	matrix:
	python-version: ["3.9","3.10"]
	runs-on: ubuntu-latest-m
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup_ingest, lint]
	steps:
	# actions/checkout MUST come before auth
	- uses: 'actions/checkout@v4'
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Get full Python version
	id: full-python-version
	run: echo version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") >> $GITHUB_OUTPUT
	- name: Setup virtual environment
	uses: ./.github/actions/base-ingest-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup docker-compose
	uses: KengoTODA/actions-setup-docker-compose@v1
	with:
	version: '2.22.0'
	- name: Test (end-to-end)
	env:
	AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
	AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
	S3_INGEST_TEST_ACCESS_KEY: ${{ secrets.S3_INGEST_TEST_ACCESS_KEY }}
	S3_INGEST_TEST_SECRET_KEY: ${{ secrets.S3_INGEST_TEST_SECRET_KEY }}
	AZURE_SEARCH_ENDPOINT: ${{ secrets.AZURE_SEARCH_ENDPOINT }}
	AZURE_SEARCH_API_KEY: ${{ secrets.AZURE_SEARCH_API_KEY }}
	BOX_APP_CONFIG: ${{ secrets.BOX_APP_CONFIG }}
	DROPBOX_APP_KEY: ${{ secrets.DROPBOX_APP_KEY }}
	DROPBOX_APP_SECRET: ${{ secrets.DROPBOX_APP_SECRET }}
	DROPBOX_REFRESH_TOKEN: ${{ secrets.DROPBOX_REFRESH_TOKEN }}
	GCP_INGEST_SERVICE_KEY: ${{ secrets.GCP_INGEST_SERVICE_KEY }}
	OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
	MONGODB_URI: ${{ secrets.MONGODB_URI }}
	MONGODB_DATABASE_NAME: ${{ secrets.MONGODB_DATABASE_NAME }}
	AZURE_DEST_CONNECTION_STR: ${{ secrets.AZURE_DEST_CONNECTION_STR }}
	PINECONE_API_KEY: ${{secrets.PINECONE_API_KEY}}
	VECTARA_OAUTH_CLIENT_ID: ${{secrets.VECTARA_OAUTH_CLIENT_ID}}
	VECTARA_OAUTH_SECRET: ${{secrets.VECTARA_OAUTH_SECRET}}
	VECTARA_CUSTOMER_ID: ${{secrets.VECTARA_CUSTOMER_ID}}
	ASTRA_DB_TOKEN: ${{secrets.ASTRA_DB_TOKEN}}
	ASTRA_DB_ENDPOINT: ${{secrets.ASTRA_DB_ENDPOINT}}
	CLARIFAI_API_KEY: ${{secrets.CLARIFAI_API_KEY}}
	DATABRICKS_HOST: ${{secrets.DATABRICKS_HOST}}
	DATABRICKS_USERNAME: ${{secrets.DATABRICKS_USERNAME}}
	DATABRICKS_PASSWORD: ${{secrets.DATABRICKS_PASSWORD}}
	DATABRICKS_CATALOG: ${{secrets.DATABRICKS_CATALOG}}
	TABLE_OCR: "tesseract"
	OCR_AGENT: "unstructured.partition.utils.ocr_models.tesseract_ocr.OCRAgentTesseract"
	CI: "true"
	run: \|
	source .venv/bin/activate
	sudo apt-get update
	sudo apt-get install -y libmagic-dev poppler-utils libreoffice
	make install-pandoc
	sudo add-apt-repository -y ppa:alex-p/tesseract-ocr5
	sudo apt-get update
	sudo apt-get install -y tesseract-ocr
	sudo apt-get install -y tesseract-ocr-kor
	sudo apt-get install diffstat
	tesseract --version
	./test_unstructured_ingest/test-ingest-dest.sh

	test_ingest_help:
	environment: ci
	strategy:
	matrix:
	python-version: ["3.9","3.10","3.11", "3.12"]
	runs-on: ubuntu-latest
	needs: [setup_ingest, lint]
	steps:
	- uses: 'actions/checkout@v4'
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup virtual environment
	uses: ./.github/actions/base-ingest-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Validate --help
	run: \|
	source .venv/bin/activate
	./test_unstructured_ingest/test-help.sh


	test_unstructured_api_unit:
	strategy:
	matrix:
	# NOTE(yuming): Unstructured API only use Python 3.10
	python-version: ["3.10"]
	runs-on: ubuntu-latest
	env:
	NLTK_DATA: ${{ github.workspace }}/nltk_data
	needs: [setup, lint]
	steps:
	- uses: actions/checkout@v4
	- name: Setup virtual environment
	uses: ./.github/actions/base-cache
	with:
	python-version: ${{ matrix.python-version }}
	- name: Set up flag for running Unstructured API unit tests
	run: \|
	# NOTE: Change env `SKIP_API_UNIT_FOR_BREAKING_CHANGE` to true if there is a breaking change in Unstructured repo that will break unstructured api unit tests
	# TODO: Change env back to false once API unit tests is in sync with unstructured repo
	echo "SKIP_API_UNIT_FOR_BREAKING_CHANGE=true" >> $GITHUB_ENV
	- name: Set up Python ${{ matrix.python-version }}
	if: env.SKIP_API_UNIT_FOR_BREAKING_CHANGE == 'false'
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup virtual environment (no cache hit)
	if: steps.virtualenv-cache.outputs.cache-hit != 'true' && env.SKIP_API_UNIT_FOR_BREAKING_CHANGE == 'false'
	run: \|
	python${{ matrix.python-version}} -m venv .venv
	source .venv/bin/activate
	mkdir "$NLTK_DATA"
	make install-ci
	- name: Test Unstructured API Unit
	if: env.SKIP_API_UNIT_FOR_BREAKING_CHANGE == 'false'
	run: \|
	source .venv/bin/activate
	# FIXME (yao): sometimes there is cache but we still miss argilla in the env; so we add make install-ci again
	make install-ci
	sudo apt-get update && sudo apt-get install --yes poppler-utils libreoffice
	sudo add-apt-repository -y ppa:alex-p/tesseract-ocr5
	sudo apt-get update
	sudo apt-get install -y tesseract-ocr tesseract-ocr-kor
	tesseract --version
	make install-nltk-models
	make test-unstructured-api-unit

	changelog:
	runs-on: ubuntu-latest
	steps:
	# need to checkout otherwise paths-filter will fail on merge-queue trigger
	- uses: actions/checkout@v4
	- if: github.ref != 'refs/heads/main'
	uses: dorny/paths-filter@v3
	id: changes
	with:
	filters: \|
	src:
	- 'unstructured/**'

	- if: steps.changes.outputs.src == 'true' && github.ref != 'refs/heads/main'
	uses: dangoslen/changelog-enforcer@v3

	# TODO - figure out best practice for caching docker images
	# (Using the virtualenv to get pytest)
	test_dockerfile:
	runs-on: ubuntu-latest-m
	needs: [ setup, lint ]
	steps:
	- uses: actions/checkout@v4
	- name: Test Dockerfile
	run: \|
	echo "UNS_API_KEY=${{ secrets.UNS_API_KEY }}" > uns_test_env_file
	make docker-build
	make docker-test CI=true UNSTRUCTURED_INCLUDE_DEBUG_METADATA=true
	- name: Scan image
	uses: anchore/scan-action@v3
	with:
	image: "unstructured:dev"
	severity-cutoff: critical
	only-fixed: true

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Feat: weighted average table metrics #13748

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Feat: weighted average table metrics #13748

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