Save two-region data as .rds in parallel runs #55
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| # This workflow is designed to be manually triggered only. | |
| name: Save two-region data as .rds in parallel runs | |
| on: | |
| workflow_dispatch: # allow manual trigger | |
| inputs: | |
| model_spec: | |
| description: "Model spec file (in quotes)" | |
| required: true | |
| default: "StateIOv1.0.0-s" | |
| type: string | |
| jobs: | |
| generate-save-data: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.script-run }}, ${{ matrix.data-year }} (${{ matrix.config.os}}, ${{ matrix.config.r}}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| script-run: | |
| - data-raw/TwoRegionModel.R | |
| data-year: | |
| - 2012 | |
| - 2013 | |
| - 2014 | |
| - 2015 | |
| - 2016 | |
| - 2017 | |
| - 2018 | |
| - 2019 | |
| - 2020 | |
| # env: | |
| # R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: devtools | |
| # Release disk space on runners | |
| - name: Release disk space on runners | |
| run: | | |
| sudo rm -rf /usr/share/dotnet # will release about 20GB if you don't need .NET | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| # Load package and generate two-region data | |
| - name: Load stateior, generate and save two-region tables | |
| run: | | |
| devtools::load_all() | |
| year <- ${{ matrix.data-year }} | |
| model_spec <- ${{ github.event.inputs.model_spec }} | |
| source("${{ matrix.script-run }}") | |
| shell: Rscript {0} | |
| # Upload .rds files | |
| - name: Upload .rds files and prepare zip for manual download | |
| uses: actions/[email protected] | |
| with: | |
| # Artifact name | |
| name: data and metadata | |
| # A file, directory or wildcard patter that describes what to upload | |
| path: "data/TwoRegion*.rds" | |
| if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn` | |
| # retention-days: 5 # cannot exceed the retention limit set by the repository, organization, or enterprise. | |
| # Upload .json files | |
| - name: Upload .json files and prepare zip for manual download | |
| uses: actions/[email protected] | |
| with: | |
| # Artifact name | |
| name: data and metadata | |
| # A file, directory or wildcard patter that describes what to upload | |
| path: "inst/extdata/metadata/TwoRegion*.json" | |
| if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn` | |
| # retention-days: 5 # cannot exceed the retention limit set by the repository, organization, or enterprise. |