Save two-region data as .rds in parallel runs #57
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow is designed to be manually triggered only. | |
| name: Save two-region data as .rds in parallel runs | |
| on: | |
| workflow_dispatch: # allow manual trigger | |
| inputs: | |
| model_spec: | |
| description: "Model spec file (in quotes)" | |
| required: true | |
| default: "StateIOv1.0.0-s" | |
| type: string | |
| jobs: | |
| generate-save-data: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.script-run }}, ${{ matrix.data-year }} (${{ matrix.config.os}}, ${{ matrix.config.r}}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| script-run: | |
| - data-raw/TwoRegionModel.R | |
| data-year: | |
| - 2012 | |
| - 2013 | |
| - 2014 | |
| - 2015 | |
| - 2016 | |
| - 2017 | |
| - 2018 | |
| - 2019 | |
| - 2020 | |
| # env: | |
| # R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: devtools | |
| # Release disk space on runners | |
| - name: Release disk space on runners | |
| run: | | |
| sudo rm -rf /usr/share/dotnet # will release about 20GB if you don't need .NET | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| # Load package and generate two-region data | |
| - name: Load stateior, generate and save two-region tables | |
| run: | | |
| devtools::load_all() | |
| year <- ${{ matrix.data-year }} | |
| model_spec <- ${{ github.event.inputs.model_spec }} | |
| source("${{ matrix.script-run }}") | |
| shell: Rscript {0} | |
| # Upload .rds files | |
| - name: Upload .rds files and prepare zip for manual download | |
| uses: actions/[email protected] | |
| with: | |
| # Artifact name | |
| name: data and metadata | |
| # A file, directory or wildcard patter that describes what to upload | |
| path: "data/TwoRegion*.rds" | |
| if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn` | |
| # retention-days: 5 # cannot exceed the retention limit set by the repository, organization, or enterprise. | |
| # Upload .json files | |
| - name: Upload .json files and prepare zip for manual download | |
| uses: actions/[email protected] | |
| with: | |
| # Artifact name | |
| name: data and metadata | |
| # A file, directory or wildcard patter that describes what to upload | |
| path: "inst/extdata/metadata/TwoRegion*.json" | |
| if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn` | |
| # retention-days: 5 # cannot exceed the retention limit set by the repository, organization, or enterprise. |