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Py open sci review #56

Merged
merged 14 commits into from
Apr 10, 2024
Merged

Py open sci review #56

merged 14 commits into from
Apr 10, 2024

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jbousquin
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Start to address Editor review

jbousquin and others added 11 commits April 1, 2024 11:08
Fix typo (readme.md): l7 on package name
Fix typo (readme.md): double spaces
Edit (general): new line at each full stop in a markdown paragraph.
fix typo (contributing.rst): double spaces
Edit (general): adding a new line at each full stop in a rst paragraph.
Edit (general): add a new line at each full stop in a markdown or rst paragraph.
Edit (general): add a new line at each full stop in a markdown or rst paragraph.
… done in the try/except was a bit proactive and gets problematic with keeping the functions in a linear workflow.
@jbousquin
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5/388 example tests break docs build (expected with functions moving between modules):

  1. harmonize.add_qa_flag(df, mask, flag) in clean.py
  2. harmonize.df_checks(df, columns=['CharacteristicName']) in clean.py
  3. harmonize.df_checks(df, columns=['ResultMeasureValue']) in clean.py
  4. harmonize.convert_unit_series(quantity_series, unit_series, units = 'mg/l') in convert.py
  5. harmonize.units_dimension(unit_series, units='mg/l') in wq_data.py

… meant to get the updated list, but will need to keep an eye out for additions for the example in docs like this. Especailly right now as there may be updates with WQX 2.0 -> 3.0.
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Removes cyclic modular-level references

@jbousquin jbousquin merged commit 81448a9 into main Apr 10, 2024
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jbousquin added a commit that referenced this pull request Apr 11, 2024
* Update README.md

Fix typo (readme.md): l7 on package name

* Update README.md

Fix typo (readme.md): double spaces

* Update README.md

Edit (general): new line at each full stop in a markdown paragraph.

* Update contributing.rst

fix typo (contributing.rst): double spaces

* Update contributing.rst

Edit (general): adding a new line at each full stop in a rst paragraph.

* Update example workflow.rst

Edit (general): add a new line at each full stop in a markdown or rst paragraph.

* Update index.rst

Edit (general): add a new line at each full stop in a markdown or rst paragraph.

* wet_dry_drop() has become outside the normal workflow, what was being done in the try/except was a bit proactive and gets problematic with keeping the functions in a linear workflow.

* from harmonize -> clean: df_checks(). add_qa_flag()

* convert_unit_series() moved harmonize -> convert

* Import specific functions instead of module

* Fix docs examples

* Module needs to be imported for example

* 'Filter/sieve residue' & 'Yield' now included in this domain. This is meant to get the updated list, but will need to keep an eye out for additions for the example in docs like this. Especailly right now as there may be updates with WQX 2.0 -> 3.0.
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