#24 Data retrieval vignette update #72
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vignettes/Data_retrieval.Rmd
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| component <- dbGetQuery(con, "SELECTFROM invitrodb.assay_component;") | ||
| component <- subset(component, acid %in% source$acid) | ||
| endpoint <- dbGetQuery(con, "SELECTFROM invitrodb.assay_component_endpoint;") | ||
| endpoint <- endpoint [grepl("ATG", endpoint $assay_component_endpoint_name),] |
vignettes/Data_retrieval.Rmd
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| source <- tcplLoadAeid(fld="asid",val=1, add.fld = c("aid", "anm", "acid", "acnm")) | ||
| #select annotation and subset by ids or name | ||
| assay <- dbGetQuery(con, "SELECT * FROM invitrodb.assay where aid=1;") | ||
| component <- dbGetQuery(con, "SELECTFROM invitrodb.assay_component;") |
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"SELECT * FROM" here and line 155
cthunes
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24-data-retrieval-vignette-update-annotations-retrieval
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Vignette has been updated with new "Assay Annotations" section. Closes #24.