Addressing roxygen2 issue #44

	# This workflow uses actions that are not certified by GitHub.
	# They are provided by a third-party and are governed by
	# separate terms of service, privacy policy, and support
	# documentation.
	#
	# See https://github.com/r-lib/actions/tree/master/examples#readme for
	# additional example workflows available for the R community.

	name: R CI

	on: [push, pull_request]

	env:
	cntr: uscbiostats/fmcmc:latest

	jobs:
	build:
	runs-on: Ubuntu-latest
	strategy:
	matrix:
	include:
	- name: release
	cmd : R

	- name: dev
	cmd : RD

	steps:
	- uses: actions/checkout@v2

	- name: Container
	run: docker pull ${cntr}

	- name: SessionInfo
	run: docker run --rm -i -v ${PWD}:/mnt -w /mnt ${cntr} ${{ matrix.cmd }} -q -e 'sessionInfo()'

	- name: Build
	run: \|
	docker run --rm -i -v ${PWD}:/mnt -w /mnt ${cntr} ${{ matrix.cmd }} \
	CMD build --no-build-vignettes --no-manual .

	- name: Check
	run: \|
	docker run --rm -i -v ${PWD}:/mnt -w /mnt -e CI=true ${cntr} \
	${{ matrix.cmd }} CMD check --no-vignettes --no-manual fmcmc_*.tar.gz

	- name: Coverage
	env:
	MATNAME: ${{ matrix.name }}
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	run: \|
	docker run --rm -i \
	-e MATNAME=$MATNAME \
	-e GITHUB_ACTION=$GITHUB_ACTION \
	-e GITHUB_REPOSITORY=$GITHUB_REPOSITORY \
	-e GITHUB_REF=$GITHUB_REF \
	-e GITHUB_HEAD_REF=$GITHUB_HEAD_REF \
	-e GITHUB_RUN_ID=$GITHUB_RUN_ID \
	-e GITHUB_SHA=$GITHUB_SHA \
	-e CODECOV_TOKEN=$CODECOV_TOKEN \
	-v ${PWD}:/mnt -w /mnt -e CI=true ${cntr} \
	${{ matrix.cmd }} -e \
	'(v <- Sys.getenv("MATNAME"));if (v == "release") covr::codecov(quiet = FALSE)'

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