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I think we should add a safety check before app.run() since atm a properly named directory will exist in tmp_dcm2bids/ (eg tmp_dcm2bids/sub-will_break but as per BIDS specs it the participant label should only be made of alphanumeric values.
label - An alphanumeric value, possibly prefixed with arbitrary number of 0s for consistent indentation, [...]. Note that labels MUST not collide when casing is ignored (see Case collision intolerance)..
In addition, dcm2bids doesn't handle it properly as shown below
dcm2bids -c dcm2bids_config_source.json -p will_break -d sourcedata/CD004 --auto_extract
_entities
INFO:dcm2bids.dcm2bids_gen:--- dcm2bids start ---
INFO:dcm2bids.dcm2bids_gen:OS:version: Linux-5.15.0-73-generic-x86_64-with-glibc2.31
INFO:dcm2bids.dcm2bids_gen:python:version: 3.11.3 (main, Apr 19 2023, 23:54:32) [GCC 11.2.0]
INFO:dcm2bids.dcm2bids_gen:dcm2bids:version: 3.0.dev
INFO:dcm2bids.dcm2bids_gen:dcm2niix:version: v1.0.20230411
INFO:dcm2bids.dcm2bids_gen:participant: sub-will_break
[...]
WARNING:dcm2bids.acquisition:There was more than one suffix found (['break', 'epi']). This is not BIDS compliant. Make sure you know what you are doing.
WARNING:dcm2bids.acquisition:✅ Filename was reordered according to BIDS entity table order:
from: sub-will_break_dir-PA_epi
to: sub-will_dir-PA_break_epi
The text was updated successfully, but these errors were encountered:
I think we should add a safety check before
app.run()
since atm a properly named directory will exist in tmp_dcm2bids/ (egtmp_dcm2bids/sub-will_break
but as per BIDS specs it the participant label should only be made of alphanumeric values.In addition, dcm2bids doesn't handle it properly as shown below
The text was updated successfully, but these errors were encountered: