Attempt to test check() on github action

UCLouvain-CBIO · Sep 5, 2023 · 9fee892 · 9fee892
1 parent 708299a
commit 9fee892
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -28,11 +28,11 @@ RoxygenNote: 7.2.3
 biocViews: FlowCytometry, Preprocessing, QualityControl, WorkflowStep,
  ImmunoOncology, Software, Visualization, GUI
 Collate: 
+    CytoPipelineGUI.R
     plots.R
     shiny-functions.R
     shiny-scaleTransform-module.R
     shiny.R
-    CytoPipelineGUI.R
 Depends: 
     R (>= 4.3),
     CytoPipeline
@@ -47,7 +47,6 @@ Suggests:
     diffviewer,
     knitr,
     rmarkdown,
-    BiocStyle,
-    patchwork
+    BiocStyle
 VignetteBuilder: knitr
 Config/testthat/edition: 3
diff --git a/man/CytoPipelineGUI.Rd b/man/CytoPipelineGUI.Rd
diff --git a/vignettes/CytoPipelineGUI.Rmd b/vignettes/CytoPipelineGUI.Rmd
@@ -54,7 +54,7 @@ These preliminary steps are performed by the preparation code below.
 ```{r pkg, include = FALSE}
 library(CytoPipeline)
 library(CytoPipelineGUI)
-library(patchwork)
+#library(patchwork)
 ```
 
 ```{r preparation, message=FALSE, warning=FALSE}
@@ -235,7 +235,8 @@ p3 <- CytoPipelineGUI::plotDiffFlowFrame(
     useAllCells = TRUE,
     useFixedLinearRange = FALSE)
 
-print(p1+p2+p3)
+#p1+p2+p3
+p1
 
 ```
 
@@ -295,7 +296,7 @@ pipL <- CytoPipeline::buildCytoPipelineFromCache(
         posDecades = 4
     )
     
-    p1+p2
+    p1#+p2
 ```