implemented pkgdown customization

UCLouvain-CBIO · Oct 15, 2024 · cd528f8 · cd528f8
1 parent 7b33958
commit cd528f8
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Showing 7 changed files with 24 additions and 6 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -2,3 +2,8 @@
 ^\.Rproj\.user$
 ^\.git$
 ^\.github$
+^data-raw$
+^doc$
+^Meta$
+^docs$
+^pkgdown$
diff --git a/.github/.gitignore b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.gitignore b/.gitignore
@@ -1,5 +1,9 @@
+.git
 .Rproj.user
 .Rhistory
 .RData
 .Ruserdata
-*.RProj
+*.Rproj
+/doc/
+/Meta/
+docs
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: CytoMDS
 Title: Low Dimensions projection of cytometry samples
-Version: 1.1.3
+Version: 1.1.4
 Authors@R:
     c(person(given = "Philippe",
              family = "Hauchamps",
@@ -30,7 +30,7 @@ Description: This package implements a low dimensional visualization of a set
 License: GPL-3
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 BugReports: https://github.com/UCLouvain-CBIO/CytoMDS/issues
 URL: https://uclouvain-cbio.github.io/CytoMDS
 biocViews: FlowCytometry, QualityControl, DimensionReduction, 
@@ -41,7 +41,7 @@ Collate:
     'ggplots.R'
     'MDS-class.R'
 Depends:
-    R (>= 4.3)
+    R (>= 4.4)
 Imports:
     methods,
     stats,

diff --git a/NEWS.md b/NEWS.md
@@ -1,11 +1,14 @@
 ## CytoMDS 1.1
 
-### CytoMDS 1.1.1
-- added citation to _bioRxiv_ pre-print
+### CytoMDS 1.1.4
+- implemented `pkgdown` customization
 
 ### CytoMDS 1.1.2 & 1.1.3
 - expression matrices as input to EMD calculation
 
+### CytoMDS 1.1.1
+- added citation to _bioRxiv_ pre-print
+
 ## CytoMDS 1.0.0
 (release Bioconductor)
 

diff --git a/pkgdown/.gitignore b/pkgdown/.gitignore
@@ -0,0 +1 @@
+^_pkgdown\.yml$
diff --git a/pkgdown/_pkgdown.yml b/pkgdown/_pkgdown.yml
@@ -0,0 +1,4 @@
+url: https://uclouvain-cbio.github.io/CytoMDS/
+template:
+    bootstrap: 5
+    bootswatch: flatly