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| "href": "docs/Setup.html", | ||
| "title": "Setup", | ||
| "section": "", | ||
| "text": "It is essential you have R and RStudio installed, and BYO laptop for the course.\nInstall R (>= 4.3.0)\nInstall RStudio\nPlease make sure all packages are installed prior to the workshop.\nInstall/update BiocManager to version 3.18.\n\ninstall.packages(\"BiocManager\") \nBiocManager::install(version = \"3.18\") \n\nThen install the packages.\n\nBiocManager::install(\"SPIAT\") \nBiocManager::install(\"spaSim\") \n\nAnd these packages:\n\ninstall.packages(c(\"elsa\", \"Rtsne\", \"umap\", \"alphahull\", \"plotly\", \"survminer\", \n \"survival\", \"vroom\", \"rmarkdown\", \"knitr\"))\nBiocManager::install(\"ComplexHeatmap\")\n\nIf asked to update all/some/none packages, please answer with a.\nIf asked to install the compilation packages, please answer with Yes.\nNote: If you don’t want to change your current library, it’s better to create a new R project and use the package renv (https://rstudio.github.io/renv/articles/renv.html) to install the packages for this workshop.\nPlease email [email protected] if you have any issue installing the packages." | ||
| "text": "Please follow the instructions in Workshop Materials to download the files.\nIt is essential you have R and RStudio installed, and please bring your own laptop for the workshop.\nInstall R (>= 4.3.0)\nInstall RStudio\nPlease make sure all packages are installed prior to the workshop.\nInstall/update BiocManager to version 3.18.\n\ninstall.packages(\"BiocManager\") \nBiocManager::install(version = \"3.18\") \n\nThen install the packages.\n\nBiocManager::install(\"SPIAT\") \nBiocManager::install(\"spaSim\") \n\nAnd these packages:\n\ninstall.packages(c(\"elsa\", \"Rtsne\", \"umap\", \"alphahull\", \"plotly\", \"survminer\", \n \"survival\", \"vroom\", \"rmarkdown\", \"knitr\"))\nBiocManager::install(\"ComplexHeatmap\")\n\nIf asked to update all/some/none packages, please answer with a.\nIf asked to install the compilation packages, please answer with Yes.\nNote: If you don’t want to change your current library, it’s better to create a new R project and use the package renv (https://rstudio.github.io/renv/articles/renv.html) to install the packages for this workshop.\nPlease email [email protected] if you have any issue installing the packages." | ||
| }, | ||
| { | ||
| "objectID": "docs/Workshop_materials.html", | ||
| "href": "docs/Workshop_materials.html", | ||
| "title": "Workshop Materials", | ||
| "section": "", | ||
| "text": "Please download the following files (worksheet, data and objects) prior to the workshop.\nWorksheet\ncellData_with-centroids\nFormatted_clinical_data\nTNBC_formatted_spe_objects\n\n\nThe complete worksheet with solutions and its knitted html are here:\nWorksheet Solution\nWorksheet solution html" | ||
| }, | ||
| { | ||
| "objectID": "index.html", | ||
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| <?xml version="1.0" encoding="UTF-8"?> | ||
| <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"> | ||
| <url> | ||
| <loc>https://TrigosTeam.github.io/ABACBS_Workshop_SPIAT_spaSim/docs/Workshop_materials.html</loc> | ||
| <lastmod>2023-11-21T04:11:52.273Z</lastmod> | ||
| <loc>https://TrigosTeam.github.io/ABACBS_Workshop_SPIAT_spaSim/docs/Setup.html</loc> | ||
| <lastmod>2023-11-30T02:52:47.559Z</lastmod> | ||
| </url> | ||
| <url> | ||
| <loc>https://TrigosTeam.github.io/ABACBS_Workshop_SPIAT_spaSim/docs/Setup.html</loc> | ||
| <lastmod>2023-11-21T04:11:53.599Z</lastmod> | ||
| <loc>https://TrigosTeam.github.io/ABACBS_Workshop_SPIAT_spaSim/docs/Workshop_materials.html</loc> | ||
| <lastmod>2023-11-30T02:52:47.912Z</lastmod> | ||
| </url> | ||
| <url> | ||
| <loc>https://TrigosTeam.github.io/ABACBS_Workshop_SPIAT_spaSim/index.html</loc> | ||
| <lastmod>2023-11-21T04:11:54.157Z</lastmod> | ||
| <lastmod>2023-11-30T02:52:48.389Z</lastmod> | ||
| </url> | ||
| </urlset> |