rename awFmDatabaseSingleKmerExactMatch function to awFmFindSearchRan…

…geForString()
TravisWheelerLab · Feb 3, 2024 · 469758e · 469758e
1 parent 7c6bb61
commit 469758e
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/AwFmIndex.h b/src/AwFmIndex.h
@@ -253,7 +253,7 @@ enum AwFmReturnCode awFmReadIndexFromFile(
 
 
 /*
- * Function:  awFmDatabaseSingleKmerExactMatch
+ * Function:  awFmFindSearchRangeForString
  * --------------------
  *  Queries the FM-Index for the range of BWT positions that represent instances
  *    of the given Kmer found in the database.
@@ -274,7 +274,7 @@ enum AwFmReturnCode awFmReadIndexFromFile(
  *    kmer may be found, as long as startPtr < endPtr. Otherwise (startPtr >= endPtr),
  *    the given kmer does not exist in the database sequence.
  */
-struct AwFmSearchRange awFmDatabaseSingleKmerExactMatch(
+struct AwFmSearchRange awFmFindSearchRangeForString(
 		const struct AwFmIndex *_RESTRICT_ const index, const char *_RESTRICT_ const kmer, const uint16_t kmerLength);
 
 

diff --git a/src/AwFmSearch.c b/src/AwFmSearch.c
@@ -265,7 +265,7 @@ enum AwFmReturnCode awFmGetHeaderStringFromSequenceNumber(const struct AwFmIndex
 }
 
 
-struct AwFmSearchRange awFmDatabaseSingleKmerExactMatch(
+struct AwFmSearchRange awFmFindSearchRangeForString(
 		const struct AwFmIndex *_RESTRICT_ const index, const char *_RESTRICT_ const kmer, const uint16_t kmerLength) {
 	int8_t kmerLetterPosition = kmerLength - 1;
 	uint16_t bwtBlockWidth;
@@ -305,7 +305,7 @@ struct AwFmSearchRange awFmDatabaseSingleKmerExactMatch(
 bool awFmSingleKmerExists(
 		const struct AwFmIndex *_RESTRICT_ const index, const char *_RESTRICT_ const kmer, const uint16_t kmerLength) {
 
-	struct AwFmSearchRange kmerRange = awFmDatabaseSingleKmerExactMatch(index, kmer, kmerLength);
+	struct AwFmSearchRange kmerRange = awFmFindSearchRangeForString(index, kmer, kmerLength);
 	return kmerRange.startPtr <= kmerRange.endPtr;
 }