migration to tractables

README.md

@@ -4,9 +4,9 @@
 
 # Probabilistic<wbr>Circuits<wbr>.jl
 
-[![Unit Tests](https://github.com/Juice-jl/ProbabilisticCircuits.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Juice-jl/ProbabilisticCircuits.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amaster)  [![codecov](https://codecov.io/gh/Juice-jl/ProbabilisticCircuits.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/Juice-jl/ProbabilisticCircuits.jl) [![](https://img.shields.io/badge/docs-stable-green.svg)](https://juice-jl.github.io/ProbabilisticCircuits.jl/stable) [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://juice-jl.github.io/ProbabilisticCircuits.jl/dev)
+[![Unit Tests](https://github.com/Tractables/ProbabilisticCircuits.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Tractables/ProbabilisticCircuits.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amaster)  [![codecov](https://codecov.io/gh/Tractables/ProbabilisticCircuits.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/Tractables/ProbabilisticCircuits.jl) [![](https://img.shields.io/badge/docs-stable-green.svg)](https://Tractables.github.io/ProbabilisticCircuits.jl/stable) [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://Tractables.github.io/ProbabilisticCircuits.jl/dev)
 
-This package provides functionalities for learning/constructing probabilistic circuits and using them to compute various probabilistic queries. It is part of the [Juice package](https://github.com/Juice-jl) (Julia Circuit Empanada).
+This package provides functionalities for learning/constructing probabilistic circuits and using them to compute various probabilistic queries. It is part of the [Juice package](https://github.com/Tractables) (Julia Circuit Empanada).
 
 ## Testing
 

README_DEV.md

@@ -6,14 +6,14 @@ Follow these instructions to install and use ProbabilisticCircuits.jl as a devel
 
 Install the Julia package in development mode by running
 
-    julia -e 'using Pkg; Pkg.develop(PackageSpec(url="https://github.com/Juice-jl/ProbabilisticCircuits.jl.git"))'
+    julia -e 'using Pkg; Pkg.develop(PackageSpec(url="https://github.com/Tractables/ProbabilisticCircuits.jl.git"))'
 
 By default this will install the package at `~/.julia/dev` and allow you to change the code there. See the [Pkg manual](https://julialang.github.io/Pkg.jl/v1/managing-packages/#Developing-packages-1) for more details. One can adjust the development directory using environment variables or simply create a symbolic link to/from your favorite development directory.
 
 
 Depending on your usecase you might also want to have `LogicCircuits.jl` in develop mode, in that case run the following to do both:
 
-    julia -e 'using Pkg; Pkg.develop([PackageSpec(url="https://github.com/Juice-jl/LogicCircuits.jl.git"),PackageSpec(url="https://github.com/Juice-jl/ProbabilisticCircuits.jl.git")])'
+    julia -e 'using Pkg; Pkg.develop([PackageSpec(url="https://github.com/Tractables/LogicCircuits.jl.git"),PackageSpec(url="https://github.com/Tractables/ProbabilisticCircuits.jl.git")])'
 
 
 ## Testing
@@ -57,8 +57,8 @@ The example is for Circuit Model Zoo, but should work for others:
 
 1. Push new updates to [UCLA-StarAI/Circuit-Model-Zoo](https://github.com/UCLA-StarAI/Circuit-Model-Zoo)
 2. Do a [new zoo release](https://github.com/UCLA-StarAI/Circuit-Model-Zoo/releases).
-3. Update the `LogicCircuits.jl`'s `Artifact.toml` file with new git tag and hash. Example commit can be found [here](https://github.com/Juice-jl/LogicCircuits.jl/commit/1cd3fda02fa7bd82d1fa02898ee404edce0d7b14).
-4. Do the same for `ProbabilisticCircuits.jl`'s `Artifact.toml` file. Example commit [here](https://github.com/Juice-jl/ProbabilisticCircuits.jl/commit/da7d3678b5f2254e60229632f74cc619505e2b2d).
+3. Update the `LogicCircuits.jl`'s `Artifact.toml` file with new git tag and hash. Example commit can be found [here](https://github.com/Tractables/LogicCircuits.jl/commit/1cd3fda02fa7bd82d1fa02898ee404edce0d7b14).
+4. Do the same for `ProbabilisticCircuits.jl`'s `Artifact.toml` file. Example commit [here](https://github.com/Tractables/ProbabilisticCircuits.jl/commit/da7d3678b5f2254e60229632f74cc619505e2b2d).
 5. Note that for each Artifact.toml, 2 things need to change: `git-tree-sha1` and `sha256`.
 6. Update the `const zoo_version = "/Circuit-Model-Zoo-0.1.4"` inside LogicCircuits.jl to the new zoo version. No changes needed in ProbabilisticCircuits since it uses the same constant.
 

docs/Readme.md

@@ -29,4 +29,4 @@ For more information about pretty URLs, check out  [the documentation](https://j
 
 ## Setting Up LaTeX
 
-Some of plotting tools we use need LaTeX to be installed. Follow the instructions from [TikzPictures.jl](https://github.com/JuliaTeX/TikzPictures.jl) to see what packages are needed. Or you can check the [ci.yml](https://github.com/Juice-jl/ProbabilisticCircuits.jl/blob/master/.github/workflows/ci.yml) which builds our documentation on github actions. If you ran into any issues might be due to old version of TexLive.
+Some of plotting tools we use need LaTeX to be installed. Follow the instructions from [TikzPictures.jl](https://github.com/JuliaTeX/TikzPictures.jl) to see what packages are needed. Or you can check the [ci.yml](https://github.com/Tractables/ProbabilisticCircuits.jl/blob/master/.github/workflows/ci.yml) which builds our documentation on github actions. If you ran into any issues might be due to old version of TexLive.

docs/make.jl

@@ -68,7 +68,7 @@ else
    Documenter.HTML(
         # Use clean URLs, unless built as a "local" build
         prettyurls = !("local" in ARGS),
-        canonical = "https://juice-jl.github.io/ProbabilisticCircuits.jl/stable/",
+        canonical = "https://Tractables.github.io/ProbabilisticCircuits.jl/stable/",
         assets = ["assets/favicon.ico"],
         analytics = "UA-136089579-2",
         highlights = ["yaml"],
@@ -94,7 +94,7 @@ makedocs(
 # for more information.
 deploydocs(
     target = "build",
-    repo = "github.com/Juice-jl/ProbabilisticCircuits.jl.git",
+    repo = "github.com/Tractables/ProbabilisticCircuits.jl.git",
     branch = "gh-pages",
     devbranch = "master",
     devurl = "dev",

docs/src/README.jl

@@ -6,9 +6,9 @@
 
 # # Probabilistic<wbr>Circuits<wbr>.jl
 
-# [![Unit Tests](https://github.com/Juice-jl/ProbabilisticCircuits.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Juice-jl/ProbabilisticCircuits.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amaster)  [![codecov](https://codecov.io/gh/Juice-jl/ProbabilisticCircuits.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/Juice-jl/ProbabilisticCircuits.jl) [![](https://img.shields.io/badge/docs-stable-green.svg)](https://juice-jl.github.io/ProbabilisticCircuits.jl/stable) [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://juice-jl.github.io/ProbabilisticCircuits.jl/dev)
+# [![Unit Tests](https://github.com/Tractables/ProbabilisticCircuits.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Tractables/ProbabilisticCircuits.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amaster)  [![codecov](https://codecov.io/gh/Tractables/ProbabilisticCircuits.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/Tractables/ProbabilisticCircuits.jl) [![](https://img.shields.io/badge/docs-stable-green.svg)](https://Tractables.github.io/ProbabilisticCircuits.jl/stable) [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://Tractables.github.io/ProbabilisticCircuits.jl/dev)
 
-# This package provides functionalities for learning/constructing probabilistic circuits and using them to compute various probabilistic queries. It is part of the [Juice package](https://github.com/Juice-jl) (Julia Circuit Empanada).
+# This package provides functionalities for learning/constructing probabilistic circuits and using them to compute various probabilistic queries. It is part of the [Juice package](https://github.com/Tractables) (Julia Circuit Empanada).
 
 # ## Testing
 

docs/src/installation.md

@@ -21,7 +21,7 @@ julia -e 'using Pkg; Pkg.add("ProbabilisticCircuits")'
 You can also install the package with the latest commits on master branch.
 
 ```bash
-julia -e 'using Pkg; Pkg.add([PackageSpec(url="https://github.com/Juice-jl/ProbabilisticCircuits.jl.git")])'
+julia -e 'using Pkg; Pkg.add([PackageSpec(url="https://github.com/Tractables/ProbabilisticCircuits.jl.git")])'
 ```
 #### From Package mode
 !!! note

docs/src/usage.jl

@@ -33,7 +33,7 @@ exp(circuit(true, true, true) - circuit(missing, true, true)) # Pr(rain=1|rainbo
 assignments, log_prob = MAP(circuit, [missing, missing, missing]; batch_size=1)
 print("The MAP assignment of the circuit is (rain=$(assignments[1]), rainbow=$(assignments[2]), wet=$(assignments[3])), with probability $(exp(log_prob)).")
 
-# Besides the above examples, ProbabilisticCircuits.jl provides functionalities for a wide variety of queries, which are detailed in [this manual](https://juice-jl.github.io/ProbabilisticCircuits.jl/stable/manual/queries/).
+# Besides the above examples, ProbabilisticCircuits.jl provides functionalities for a wide variety of queries, which are detailed in [this manual](https://Tractables.github.io/ProbabilisticCircuits.jl/stable/manual/queries/).
 
 # ### Building complex circuit structures