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Refactoring towards addressing #93. Changes mainly around comparison …
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…of coordinates in the presence of separate coordinate tiles.
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@stavrospapadopoulos
stavrospapadopoulos committed Jan 7, 2020
1 parent cb47648 commit 8676328
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Showing 15 changed files with 633 additions and 763 deletions.
128 changes: 91 additions & 37 deletions test/src/unit-ReadCellSlabIter.cc
View file
Original file line number Diff line number Diff line change
Expand Up @@ -128,8 +128,8 @@ void ReadCellSlabIterFx::check_iter(
CHECK(result_cell_slab.tile_ == nullptr);
} else {
CHECK(result_cell_slab.tile_ != nullptr);
CHECK(result_cell_slab.tile_->frag_idx_ == rcs[0]);
CHECK(result_cell_slab.tile_->tile_idx_ == rcs[1]);
CHECK(result_cell_slab.tile_->frag_idx() == rcs[0]);
CHECK(result_cell_slab.tile_->tile_idx() == rcs[1]);
}
CHECK(result_cell_slab.start_ == rcs[2]);
CHECK(result_cell_slab.length_ == rcs[3]);
Expand Down Expand Up @@ -175,7 +175,7 @@ TEST_CASE_METHOD(
"[ReadCellSlabIter][empty]") {
Subarray* subarray = nullptr;
std::map<const int32_t*, ResultSpaceTile<int32_t>> result_space_tiles;
std::vector<ResultCoords<int32_t>> result_coords;
std::vector<ResultCoords> result_coords;
ReadCellSlabIter<int32_t> iter(subarray, &result_space_tiles, &result_coords);
CHECK(iter.end());
CHECK(iter.begin().ok());
Expand Down Expand Up @@ -228,7 +228,7 @@ TEST_CASE_METHOD(
&result_space_tiles);

// Check iterator
std::vector<ResultCoords<uint64_t>> result_coords;
std::vector<ResultCoords> result_coords;
ReadCellSlabIter<uint64_t> iter(
&subarray, &result_space_tiles, &result_coords);
std::vector<std::vector<uint64_t>> c_result_cell_slabs = {
Expand Down Expand Up @@ -286,7 +286,7 @@ TEST_CASE_METHOD(
&result_space_tiles);

// Check iterator
std::vector<ResultCoords<uint64_t>> result_coords;
std::vector<ResultCoords> result_coords;
ReadCellSlabIter<uint64_t> iter(
&subarray, &result_space_tiles, &result_coords);
std::vector<std::vector<uint64_t>> c_result_cell_slabs = {
Expand Down Expand Up @@ -344,7 +344,7 @@ TEST_CASE_METHOD(
&result_space_tiles);

// Check iterator
std::vector<ResultCoords<uint64_t>> result_coords;
std::vector<ResultCoords> result_coords;
ReadCellSlabIter<uint64_t> iter(
&subarray, &result_space_tiles, &result_coords);
std::vector<std::vector<uint64_t>> c_result_cell_slabs = {
Expand Down Expand Up @@ -407,24 +407,46 @@ TEST_CASE_METHOD(
tile_coords,
&result_space_tiles);

auto dim_num = 1;

// Create result coordinates
std::vector<ResultCoords<uint64_t>> result_coords;
ResultTile result_tile_2_0(2, 0);
ResultTile result_tile_3_0(3, 0);
ResultTile result_tile_3_1(3, 1);
uint64_t coords_2_3 = 3;
uint64_t coords_2_5 = 5;
uint64_t coords_3_8 = 8;
uint64_t coords_3_9 = 9;
uint64_t coords_3_12 = 12;
uint64_t coords_3_19 = 19;
result_coords.emplace_back(&result_tile_2_0, &coords_2_3, 1);
result_coords.emplace_back(&result_tile_2_0, &coords_2_5, 3);
result_coords.emplace_back(&result_tile_3_0, &coords_3_8, 2);
result_coords.emplace_back(&result_tile_3_0, &coords_3_9, 3);
std::vector<ResultCoords> result_coords;
ResultTile result_tile_2_0(2, 0, dim_num);
ResultTile result_tile_3_0(3, 0, dim_num);
ResultTile result_tile_3_1(3, 1, dim_num);

result_tile_2_0.init_coord_tile("d", 0);
result_tile_3_0.init_coord_tile("d", 0);
result_tile_3_1.init_coord_tile("d", 0);

std::vector<uint64_t> vec_2_0 = {1000, 3, 1000, 5};
Buffer buff_2_0(&vec_2_0[0], vec_2_0.size() * sizeof(uint64_t));
Tile tile_2_0(Datatype::UINT64, sizeof(uint64_t), 0, &buff_2_0, false);
auto tile_pair = result_tile_2_0.tile_pair("d");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_2_0;

std::vector<uint64_t> vec_3_0 = {1000, 1000, 8, 9};
Buffer buff_3_0(&vec_3_0[0], vec_3_0.size() * sizeof(uint64_t));
Tile tile_3_0(Datatype::UINT64, sizeof(uint64_t), 0, &buff_3_0, false);
tile_pair = result_tile_3_0.tile_pair("d");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_3_0;

std::vector<uint64_t> vec_3_1 = {1000, 12, 19, 1000};
Buffer buff_3_1(&vec_3_1[0], vec_3_1.size() * sizeof(uint64_t));
Tile tile_3_1(Datatype::UINT64, sizeof(uint64_t), 0, &buff_3_1, false);
tile_pair = result_tile_3_1.tile_pair("d");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_3_1;

result_coords.emplace_back(&result_tile_2_0, 1);
result_coords.emplace_back(&result_tile_2_0, 3);
result_coords.emplace_back(&result_tile_3_0, 2);
result_coords.emplace_back(&result_tile_3_0, 3);
result_coords.back().invalidate();
result_coords.emplace_back(&result_tile_3_1, &coords_3_12, 1);
result_coords.emplace_back(&result_tile_3_1, &coords_3_19, 2);
result_coords.emplace_back(&result_tile_3_1, 1);
result_coords.emplace_back(&result_tile_3_1, 2);

// Check iterator
ReadCellSlabIter<uint64_t> iter(
Expand Down Expand Up @@ -608,7 +630,7 @@ TEST_CASE_METHOD(
&result_space_tiles);

// Create result coordinates
std::vector<ResultCoords<uint64_t>> result_coords;
std::vector<ResultCoords> result_coords;

// Check iterator
ReadCellSlabIter<uint64_t> iter(
Expand Down Expand Up @@ -777,7 +799,7 @@ TEST_CASE_METHOD(
&result_space_tiles);

// Create result coordinates
std::vector<ResultCoords<uint64_t>> result_coords;
std::vector<ResultCoords> result_coords;

// Check iterator
ReadCellSlabIter<uint64_t> iter(
Expand Down Expand Up @@ -959,7 +981,7 @@ TEST_CASE_METHOD(
&result_space_tiles);

// Create result coordinates
std::vector<ResultCoords<uint64_t>> result_coords;
std::vector<ResultCoords> result_coords;

// Check iterator
ReadCellSlabIter<uint64_t> iter(
Expand All @@ -971,9 +993,8 @@ TEST_CASE_METHOD(

TEST_CASE_METHOD(
ReadCellSlabIterFx,
"ReadCellSlabIter: Test 2D slabs, multiple ranges, 2 denses fragments, 1 "
"sparse "
"overlap",
"ReadCellSlabIter: Test 2D slabs, multiple ranges, 2 dense fragments, "
"1 sparse, overlap",
"[ReadCellSlabIter][slabs][2d][mr][2df1sf]") {
Layout subarray_layout = Layout::ROW_MAJOR;
Layout tile_domain_layout = Layout::ROW_MAJOR;
Expand Down Expand Up @@ -1186,16 +1207,49 @@ TEST_CASE_METHOD(
tile_coords,
&result_space_tiles);

unsigned dim_num = 2;

// Create result coordinates
std::vector<ResultCoords<uint64_t>> result_coords;
ResultTile result_tile_3_0(3, 0);
ResultTile result_tile_3_1(3, 1);
uint64_t coords_3_3_3[] = {3, 3};
uint64_t coords_3_5_5[] = {5, 5};
uint64_t coords_3_5_6[] = {5, 6};
result_coords.emplace_back(&result_tile_3_0, coords_3_3_3, 1);
result_coords.emplace_back(&result_tile_3_1, coords_3_5_5, 0);
result_coords.emplace_back(&result_tile_3_1, coords_3_5_6, 2);
std::vector<ResultCoords> result_coords;
ResultTile result_tile_3_0(3, 0, dim_num);
ResultTile result_tile_3_1(3, 1, dim_num);

result_tile_3_0.init_coord_tile("d1", 0);
result_tile_3_0.init_coord_tile("d2", 1);
result_tile_3_1.init_coord_tile("d1", 0);
result_tile_3_1.init_coord_tile("d2", 1);

std::vector<uint64_t> vec_3_0_d1 = {1000, 3, 1000, 1000};
Buffer buff_3_0_d1(&vec_3_0_d1[0], vec_3_0_d1.size() * sizeof(uint64_t));
Tile tile_3_0_d1(Datatype::UINT64, sizeof(uint64_t), 0, &buff_3_0_d1, false);
auto tile_pair = result_tile_3_0.tile_pair("d1");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_3_0_d1;

std::vector<uint64_t> vec_3_0_d2 = {1000, 3, 1000, 1000};
Buffer buff_3_0_d2(&vec_3_0_d2[0], vec_3_0_d2.size() * sizeof(uint64_t));
Tile tile_3_0_d2(Datatype::UINT64, sizeof(uint64_t), 0, &buff_3_0_d2, false);
tile_pair = result_tile_3_0.tile_pair("d2");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_3_0_d2;

std::vector<uint64_t> vec_3_1_d1 = {5, 1000, 5, 1000};
Buffer buff_3_1_d1(&vec_3_1_d1[0], vec_3_1_d1.size() * sizeof(uint64_t));
Tile tile_3_1_d1(Datatype::UINT64, sizeof(uint64_t), 0, &buff_3_1_d1, false);
tile_pair = result_tile_3_1.tile_pair("d1");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_3_1_d1;

std::vector<uint64_t> vec_3_1_d2 = {5, 1000, 6, 1000};
Buffer buff_3_1_d2(&vec_3_1_d2[0], vec_3_1_d2.size() * sizeof(uint64_t));
Tile tile_3_1_d2(Datatype::UINT64, sizeof(uint64_t), 0, &buff_3_1_d2, false);
tile_pair = result_tile_3_1.tile_pair("d2");
REQUIRE(tile_pair != nullptr);
tile_pair->first = tile_3_1_d2;

result_coords.emplace_back(&result_tile_3_0, 1);
result_coords.emplace_back(&result_tile_3_1, 0);
result_coords.emplace_back(&result_tile_3_1, 2);

// Check iterator
ReadCellSlabIter<uint64_t> iter(
Expand Down
10 changes: 5 additions & 5 deletions test/src/unit-Reader.cc
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Original file line number Diff line number Diff line change
Expand Up @@ -161,15 +161,15 @@ TEST_CASE_METHOD(
CHECK(result_space_tiles.size() == 6);

// Result tiles for fragment #1
ResultTile result_tile_1_0_1(1, 0);
ResultTile result_tile_1_2_1(1, 2);
ResultTile result_tile_1_0_1(1, 0, dim_num);
ResultTile result_tile_1_2_1(1, 2, dim_num);

// Result tiles for fragment #2
ResultTile result_tile_1_0_2(2, 0);
ResultTile result_tile_1_0_2(2, 0, dim_num);

// Result tiles for fragment #3
ResultTile result_tile_2_0_3(3, 0);
ResultTile result_tile_3_0_3(3, 2);
ResultTile result_tile_2_0_3(3, 0, dim_num);
ResultTile result_tile_3_0_3(3, 2, dim_num);

// Initialize frag domains
typedef std::pair<unsigned, const int32_t*> FragDomain;
Expand Down
6 changes: 3 additions & 3 deletions test/src/unit-capi-sparse_array.cc
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Original file line number Diff line number Diff line change
Expand Up @@ -2947,16 +2947,16 @@ TEST_CASE_METHOD(
REQUIRE(rc == TILEDB_OK);
REQUIRE(status == TILEDB_COMPLETED);

CHECK(a1_size == sizeof(a1));
CHECK(a2_off_size == sizeof(a2_off));
CHECK(a2_size == 3 * sizeof(char));
CHECK(a1[0] == 0);
CHECK(a1[1] == 1);
CHECK(a1_size == sizeof(a1));
CHECK(a2_off[0] == 0);
CHECK(a2_off[1] == 1);
CHECK(a2_off_size == sizeof(a2_off));
CHECK(a2[0] == 'a');
CHECK(a2[1] == 'b');
CHECK(a2[2] == 'b');
CHECK(a2_size == 3 * sizeof(char));

// Close array
CHECK(tiledb_array_close(ctx, array) == TILEDB_OK);
Expand Down
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