Migrate use of tiledb_array_consolidate_with_key deprecated API. #6314
Workflow file for this run
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| name: TileDB Python CI | |
| on: [push, pull_request, workflow_dispatch] | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-12, windows-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| fail-fast: false | |
| env: | |
| # 11.7 necessary due to: https://github.com/actions/setup-python/issues/682#issuecomment-1604261330 | |
| MACOSX_DEPLOYMENT_TARGET: ${{ matrix.os == 'macos-12' && matrix.python-version == '3.8' && '11.7' || '11' }} | |
| #MACOSX_DEPLOYMENT_TARGET: "10.11" | |
| # On windows-2019 we are using the Visual Studio generator, which is multi-config and places the build artifacts in a subdirectory | |
| steps: | |
| - name: Checkout TileDB-Py `dev` | |
| uses: actions/checkout@v3 | |
| # By default Visual Studio chooses the earliest installed toolset version | |
| # for the main build and vcpkg chooses the latest. Force it to use the | |
| # latest (14.39 currently). | |
| - name: Setup MSVC toolset (VS 2022) | |
| uses: TheMrMilchmann/setup-msvc-dev@v3 | |
| if: matrix.os == 'windows-latest' | |
| with: | |
| arch: x64 | |
| toolset: 14.39 | |
| - name: Install Ninja (VS 2022) | |
| uses: seanmiddleditch/gha-setup-ninja@v4 | |
| if: matrix.os == 'windows-latest' | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Print Python version | |
| run: | | |
| which python | |
| which pip | |
| python --version | |
| - name: Print env | |
| run: printenv | |
| - name: Print pip debug info | |
| run: pip debug --verbose | |
| # Remove after upstream PR fully-deployed: | |
| # - https://github.com/actions/runner-images/pull/7125 | |
| - name: "Install homebrew dependencies" | |
| run: brew install pkg-config | |
| if: matrix.os == 'macos-12' | |
| - name: "Install dependencies" | |
| run: python -m pip install --upgrade -r misc/requirements_ci.txt | |
| - name: "Get TILEDB_VERSION" | |
| run: echo "LIBTILEDB_VERSION=$(python setup.py get_tiledb_version | tail -n 1)" >> $GITHUB_ENV | |
| - name: "Get LIBTILEDB_SHA" | |
| run: echo "LIBTILEDB_SHA=$(git ls-remote https://github.com/TileDB-Inc/TileDB $LIBTILEDB_VERSION | cut -c1-7)" >> $GITHUB_ENV | |
| - name: "Download TileDB From Zip And Build TileDB-Py (Windows)" | |
| run: | | |
| choco install wget --no-progress | |
| if wget https://github.com/TileDB-Inc/TileDB/releases/download/$LIBTILEDB_VERSION/tiledb-windows-x86_64-$LIBTILEDB_VERSION-$LIBTILEDB_SHA.zip; then | |
| mkdir libtiledb | |
| unzip tiledb-windows-x86_64-$LIBTILEDB_VERSION-$LIBTILEDB_SHA.zip -d libtiledb | |
| cp libtiledb/bin/tiledb.dll tiledb | |
| python setup.py develop --tiledb=libtiledb | |
| else | |
| # Build from source as fallback | |
| python setup.py build_ext --inplace | |
| python setup.py develop | |
| fi | |
| env: | |
| TILEDB_FORCE_ALL_DEPS: True | |
| CMAKE_GENERATOR: "Ninja" | |
| if: matrix.os == 'windows-latest' | |
| - name: "Download TileDB From Tarball And Build TileDB-Py (macOS)" | |
| run: | | |
| set -xeo pipefail | |
| if wget https://github.com/TileDB-Inc/TileDB/releases/download/$LIBTILEDB_VERSION/tiledb-macos-x86_64-$LIBTILEDB_VERSION-$LIBTILEDB_SHA.tar.gz; then | |
| mkdir libtiledb | |
| sudo tar -vzxf tiledb-macos-x86_64-$LIBTILEDB_VERSION-$LIBTILEDB_SHA.tar.gz -C libtiledb | |
| python setup.py develop --tiledb=libtiledb | |
| else | |
| # Build from source as fallback | |
| python setup.py build_ext --inplace | |
| python setup.py develop | |
| fi | |
| if: matrix.os == 'macos-12' | |
| - name: "Download TileDB From Tarball And Build TileDB-Py (Linux)" | |
| run: | | |
| set -xeo pipefail | |
| if wget https://github.com/TileDB-Inc/TileDB/releases/download/$LIBTILEDB_VERSION/tiledb-linux-x86_64-$LIBTILEDB_VERSION-$LIBTILEDB_SHA.tar.gz; then | |
| mkdir libtiledb | |
| sudo tar -vzxf tiledb-linux-x86_64-$LIBTILEDB_VERSION-$LIBTILEDB_SHA.tar.gz -C libtiledb | |
| python setup.py develop --tiledb=libtiledb | |
| else | |
| # Build from source as fallback | |
| python setup.py build_ext --inplace | |
| python setup.py develop | |
| fi | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: "Check build directory" | |
| run: ls -Rl | |
| - name: "Install libfaketime (linux and macOS)" | |
| if: matrix.os == 'ubuntu-latest' || matrix.os == 'macos-12' | |
| run: | | |
| git clone https://github.com/wolfcw/libfaketime/ | |
| cd libfaketime | |
| sudo make install | |
| cd .. | |
| - name: "Run tests" | |
| run: pytest -vv --showlocals | |
| - name: "Print log files (failed build only)" | |
| run: | | |
| set -xeo pipefail | |
| # Display log files if the build failed | |
| echo 'Dumping log files for failed build' | |
| echo '----------------------------------' | |
| for f in $(find build -name *.log); | |
| do echo '------' | |
| echo $f | |
| echo '======' | |
| cat $f | |
| done; | |
| if: failure() |