Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Request: allow to specify AnnData layer to use #90

Open
pcm32 opened this issue Oct 9, 2023 · 1 comment
Open

Request: allow to specify AnnData layer to use #90

pcm32 opened this issue Oct 9, 2023 · 1 comment

Comments

@pcm32
Copy link

pcm32 commented Oct 9, 2023

Sometimes, AnnData files will include other flavours in the .X, but not the log normalised version of the matrix. Would you be able to add an option in the CLI that would allow us to specify the AnnData layer to use instead of .X? Otherwise we would need to read the AnnData, modify it, save it and then load it into cell typist.

Thanks!
@ChuanXu1
Copy link
Collaborator

@pcm32, layers are currently not supported; will add this option in the new version probably. Thanks for this suggestion.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@pcm32 @ChuanXu1