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priesgo committed Oct 24, 2023
1 parent 21ac147 commit bf97344
Showing 1 changed file with 0 additions and 4 deletions.
4 changes: 0 additions & 4 deletions covigator/dashboard/tabs/dataset_covid19_portal.py
Original file line number Diff line number Diff line change
Expand Up @@ -134,8 +134,6 @@ def get_plot_coverage(queries: Queries):
return [
dcc.Graph(figure=fig, config=PLOTLY_CONFIG),
dcc.Markdown("""
**Horizontal coverage (%)**
Horizontal coverage is estimated as the sequence length divided by the reference genome length.
Some samples have thus an horizontal coverage larger than 100 %.
""")
Expand Down Expand Up @@ -163,8 +161,6 @@ def get_plot_bad_bases_ratio(queries: Queries, count_samples):
return [
dcc.Graph(figure=fig, config=PLOTLY_CONFIG),
dcc.Markdown("""
**Ratio of N and ambiguous bases (%)**
The ratio of N and ambiguous bases over the whole sequence length measures the quality of the assembly sequence.
{} % of samples have a ratio <= 5 %.
""".format(round(float(data[data["bad_bases_ratio"] <= 5]["count"].sum()) / count_samples, 1)))
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