fix: normalize all line endings

ComplementaryData/modelCuration/Biomass_newRxnMatrix.tsv

@@ -1,29 +1,29 @@
-rxnID	coefficient	Metabolite standard name	Metabolite_type	compartment
-MNXR96437	1	Ca(2+)	reactant	extracellular
-MNXR96437	1	H+	reactant	extracellular
-MNXR96437	1	Ca(2+)	product	cytoplasm
-MNXR96437	1	H+	product	cytoplasm
-MNXR96797	1	chloride	reactant	extracellular
-MNXR96797	1	chloride	product	cytoplasm
-MNXR126350	1	Cu2(+)	reactant	extracellular
-MNXR126350	1	H+	reactant	extracellular
-MNXR126350	1	Cu2(+)	product	cytoplasm
-MNXR126350	1	H+	product	cytoplasm
-MNXR101669	1	Mn(2+)	reactant	extracellular
-MNXR101669	1	H+	reactant	extracellular
-MNXR101669	1	Mn(2+)	product	cytoplasm
-MNXR101669	1	H+	product	cytoplasm
-MNXR105278	1	Zn(2+)	reactant	extracellular
-MNXR105278	1	H+	reactant	extracellular
-MNXR105278	1	Zn(2+)	product	cytoplasm
-MNXR105278	1	H+	product	cytoplasm
-MNXR101553	1	Mg(2+)	reactant	extracellular
-MNXR101553	1	H+	reactant	extracellular
-MNXR101553	1	Mg(2+)	product	cytoplasm
-MNXR101553	1	H+	product	cytoplasm
-chloride exchange	1	chloride	reactant	extracellular
-Cu2(+) exchange	1	Cu2(+)	reactant	extracellular
-Mn(2+) exchange	1	Mn(2+)	reactant	extracellular
-Zn(2+) exchange	1	Zn(2+)	reactant	extracellular
-Mg(2+) exchange	1	Mg(2+)	reactant	extracellular
-Ca(2+) exchange	1	Ca(2+)	reactant	extracellular
+rxnID	coefficient	Metabolite standard name	Metabolite_type	compartment
+MNXR96437	1	Ca(2+)	reactant	extracellular
+MNXR96437	1	H+	reactant	extracellular
+MNXR96437	1	Ca(2+)	product	cytoplasm
+MNXR96437	1	H+	product	cytoplasm
+MNXR96797	1	chloride	reactant	extracellular
+MNXR96797	1	chloride	product	cytoplasm
+MNXR126350	1	Cu2(+)	reactant	extracellular
+MNXR126350	1	H+	reactant	extracellular
+MNXR126350	1	Cu2(+)	product	cytoplasm
+MNXR126350	1	H+	product	cytoplasm
+MNXR101669	1	Mn(2+)	reactant	extracellular
+MNXR101669	1	H+	reactant	extracellular
+MNXR101669	1	Mn(2+)	product	cytoplasm
+MNXR101669	1	H+	product	cytoplasm
+MNXR105278	1	Zn(2+)	reactant	extracellular
+MNXR105278	1	H+	reactant	extracellular
+MNXR105278	1	Zn(2+)	product	cytoplasm
+MNXR105278	1	H+	product	cytoplasm
+MNXR101553	1	Mg(2+)	reactant	extracellular
+MNXR101553	1	H+	reactant	extracellular
+MNXR101553	1	Mg(2+)	product	cytoplasm
+MNXR101553	1	H+	product	cytoplasm
+chloride exchange	1	chloride	reactant	extracellular
+Cu2(+) exchange	1	Cu2(+)	reactant	extracellular
+Mn(2+) exchange	1	Mn(2+)	reactant	extracellular
+Zn(2+) exchange	1	Zn(2+)	reactant	extracellular
+Mg(2+) exchange	1	Mg(2+)	reactant	extracellular
+Ca(2+) exchange	1	Ca(2+)	reactant	extracellular

ComplementaryData/modelCuration/Biomass_newRxnMet.tsv

@@ -1,7 +1,7 @@
-NewMetName	Charged formula	Charge	compartment	KEGG ID	CHEBI ID	Remark
-Ca(2+) [extracellular]	Ca	2	extracellular	C00076	CHEBI:29108
-chloride [extracellular]	Cl	-1	extracellular	C00698	CHEBI:17996
-Cu2(+) [extracellular]	Cu	2	extracellular	C00070	CHEBI:29036
-Mn(2+) [extracellular]	Mn	2	extracellular	C19610	CHEBI:29035
-Zn(2+) [extracellular]	Zn	2	extracellular	C00038	CHEBI:29105
-Mg(2+) [extracellular]	Mg	2	extracellular	C00305	CHEBI:18420		
+NewMetName	Charged formula	Charge	compartment	KEGG ID	CHEBI ID	Remark
+Ca(2+) [extracellular]	Ca	2	extracellular	C00076	CHEBI:29108
+chloride [extracellular]	Cl	-1	extracellular	C00698	CHEBI:17996
+Cu2(+) [extracellular]	Cu	2	extracellular	C00070	CHEBI:29036
+Mn(2+) [extracellular]	Mn	2	extracellular	C19610	CHEBI:29035
+Zn(2+) [extracellular]	Zn	2	extracellular	C00038	CHEBI:29105
+Mg(2+) [extracellular]	Mg	2	extracellular	C00305	CHEBI:18420		

ComplementaryData/modelCuration/Biomass_newRxnProp.tsv

@@ -1,13 +1,13 @@
-rxnID	rev	GPR	rxn_name_seed	EC	rxnID_kegg	Source;reason
-MNXR96437	1	YOL122C	Ca(2+) transport 			bigg:CAt4; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
-MNXR96797	1	YNL275W	chloride transport			bigg:Clt; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
-MNXR126350	1	YOL122C	Cu2(+) transport			rhea:28727; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
-MNXR101669	1	YGR191W	Mn(2+) transport			seed:rxn08946; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
-MNXR105278	1	( YGL255W or YLR130C )	Zn(2+) transport			bigg:ZN2t3pp; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
-MNXR101553	1	( GR191W or YOL130W )	Mg(2+) transport			bigg:MGt2pp; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
-chloride exchange	1		chloride exchange
-Cu2(+) exchange	1		Cu2(+) exchange
-Mn(2+) exchange	1		Mn(2+) exchange
-Zn(2+) exchange	1		Zn(2+) exchange
-Mg(2+) exchange	1		Mg(2+) exchange
-Ca(2+) exchange	1		Ca(2+) exchange
+rxnID	rev	GPR	rxn_name_seed	EC	rxnID_kegg	Source;reason
+MNXR96437	1	YOL122C	Ca(2+) transport 			bigg:CAt4; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
+MNXR96797	1	YNL275W	chloride transport			bigg:Clt; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
+MNXR126350	1	YOL122C	Cu2(+) transport			rhea:28727; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
+MNXR101669	1	YGR191W	Mn(2+) transport			seed:rxn08946; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
+MNXR105278	1	( YGL255W or YLR130C )	Zn(2+) transport			bigg:ZN2t3pp; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
+MNXR101553	1	( GR191W or YOL130W )	Mg(2+) transport			bigg:MGt2pp; gRrules come from TCDB, not included in the DBnewAnnotaiton update (PR #142)
+chloride exchange	1		chloride exchange
+Cu2(+) exchange	1		Cu2(+) exchange
+Mn(2+) exchange	1		Mn(2+) exchange
+Zn(2+) exchange	1		Zn(2+) exchange
+Mg(2+) exchange	1		Mg(2+) exchange
+Ca(2+) exchange	1		Ca(2+) exchange