Merge pull request #7 from SysBioChalmers/fix/masterScript

Fix: annotate model after .mat and .yml export, but before .xml export
SysBioChalmers · Oct 10, 2022 · 46e5558 · 46e5558
2 parents 7c92b73 + e76f4ac
commit 46e5558
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/code/masterScriptWormGEM.m b/code/masterScriptWormGEM.m
@@ -43,9 +43,9 @@
     exportTsvFile(metAssoc,'../model/metabolites.tsv');
 end
 
-wormGEM = annotateGEM(wormGEM,'../model',{'rxn','met'});  % add annotation data to structure
-wormGEM.id = regexprep(wormGEM.id,'-','');  % remove dash from model ID since it causes problems with SBML I/O
 save('../model/Worm-GEM.mat', 'wormGEM');
 exportYaml(wormGEM, '../model/Worm-GEM.yml');
+wormGEM = annotateGEM(wormGEM,'../model',{'rxn','met'});  % add annotation data to structure
+wormGEM.id = regexprep(wormGEM.id,'-','');  % remove dash from model ID since it causes problems with SBML I/O
 exportModel(wormGEM, '../model/Worm-GEM.xml');