Merge branch 'syncTemplateGEM' into develop

SysBioChalmers · May 3, 2022 · e212ed3 · e212ed3
2 parents 9e4cb41 + 88174cb
commit e212ed3
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diff --git a/code/README.md b/code/README.md
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+# Rat-GEM code
+
+- `masterScriptRatGEM.m`:  The master script for GEM generation.
+
+
diff --git a/code/masterScriptRatGEM.m b/code/masterScriptRatGEM.m
@@ -42,6 +42,8 @@
     exportTsvFile(metAssoc,'../model/metabolites.tsv');
 end
 
+ratGEM = annotateGEM(ratGEM,'../model',{'rxn','met'});  % add annotation data to structure
+ratGEM.id = regexprep(ratGEM.id,'-','');  % remove dash from model ID since it causes problems with SBML I/O
 save('../model/Rat-GEM.mat', 'ratGEM');
 exportYaml(ratGEM, '../model/Rat-GEM.yml');
 exportModel(ratGEM, '../model/Rat-GEM.xml');
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		# Rat-GEM code

		- `masterScriptRatGEM.m`: The master script for GEM generation.