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Merge pull request #2 from SysBioChalmers/feat/addData
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feat: add data
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haowang-bioinfo authored Oct 20, 2020
2 parents f995d4c + 34d28b5 commit aa3a453
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1,735 changes: 1,735 additions & 0 deletions data/MSigDB/KeggReactiomeHallmark.mouse.gmt

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289 changes: 289 additions & 0 deletions data/MSigDB/c2.cp.biocarta.v7.0.symbols.mouse.gmt

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186 changes: 186 additions & 0 deletions data/MSigDB/c2.cp.kegg.v7.0.symbols.mouse.gmt

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1,499 changes: 1,499 additions & 0 deletions data/MSigDB/c2.cp.reactome.v7.0.symbols.mouse.gmt

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7,350 changes: 7,350 additions & 0 deletions data/MSigDB/c5.bp.v7.0.symbols.mouse.gmt

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1,001 changes: 1,001 additions & 0 deletions data/MSigDB/c5.cc.v7.0.symbols.mouse.gmt

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1,645 changes: 1,645 additions & 0 deletions data/MSigDB/c5.mf.v7.0.symbols.mouse.gmt

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50 changes: 50 additions & 0 deletions data/MSigDB/h.all.v7.0.symbols.mouse.gmt

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1,181,639 changes: 1,181,639 additions & 0 deletions data/human2MouseOrthologs.json

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11 changes: 11 additions & 0 deletions data/mouseSpecificMets.tsv
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mets metNames metFormulas metCharges compartments metKEGGID metPubChemID metChEBIID metMetaCycID metMetaNetXID
"m20001g" "N-Acetyllactosamine" "C14H25NO11" 0 "g" "C00611" "3885" "CHEBI:16153" "BETA-D-GALACTOSYL-ETCETERA-GLUCOSAMINE" "MNXM729847"
"m20002g" "alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine" "C20H35NO16" 0 "g" "C04847" "7404" "CHEBI:18217;CHEBI:62327" "ALPHA-D-GALACTOSYL-13-BETA-D-GALACTOS" "MNXM735633"
"m20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "7864" "CHEBI:58585" "L-ALLO-THREONINE" "MNXM2125"
"m20004c" "Benzenamine sulfate" "C6H6NO3S" -1 "c" "C06011" "440879" "CHEBI:3024" "BENZENAMINE-SULFATE" "MNXM8327"
"m20005p" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "p" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761"
"m20006p" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "p" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778"
"m20007r" "L-xylo-Hexulonolactone" "C6H8O6" 0 "r" "C03289" "6146" "CHEBI:73681" "" "MNXM731654"
"m01368r" "ascorbate" "C6H7O6" -1 "r" "C00072" "" "CHEBI:38290" "ASCORBATE" "MNXM727871"
"m01104p" "5-hydroxyisourate" "C5H4N4O4" 0 "p" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137"
"m10018p" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "p" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805"
11 changes: 11 additions & 0 deletions data/mouseSpecificRxns.tsv
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rxns equations ub lb eccodes subSystems grRules rxnReferences rxnConfidenceScores rxnKEGGID rxnMetaCycID rxnREACTOMEID rxnMetaNetXID
"MA_20001" "NAD+[m] + threonine[m] => NADH[m] + H+[m] + L-2-amino-3-oxobutanoic acid[m]" 1000 0 "1.1.1.103" "Glycine, serine and threonine metabolism" "Tdh" "PMID:26492815" 4 "R01465" "THREODEHYD-RXN" "R-HSA-6798667" "MNXR103402"
"MA_20002" "N-Acetyllactosamine[g] + UDP-galactose[g] => alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine[g] + UDP[g] + H+[g]" 1000 0 "2.4.1.87" "Glycosphingolipid biosynthesis" "Ggta1" "" 2 "R04531" "2.4.1.124-RXN" "" "MNXR115091"
"MA_20003" "L-Allothreonine[c] <=> glycine[c] + acetaldehyde[c]" 1000 -1000 "4.1.2.48;4.1.2.49" "Glycine, serine and threonine metabolism" "Tha1" "" 2 "R06171" "LTAA-RXN" "" "MNXR104834"
"MA_20004" "H2O[p] + 5-hydroxyisourate[p] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] + H+[p]" 1000 0 "3.5.2.17" "Purine metabolism" "Urah" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652"
"MA_20005" "5-hydroxyisourate[p] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
"MA_20006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[p] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" ""
"MA_20007" "2 H2O[p] + O2[p] + 1,3,7-Trimethyluric acid[p] <=> CO2[p] + H2O2[p] + 3,6,8-Trimethylallantoin[p]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uox" "" 2 "R07981" "" "" "MNXR111564"
"MA_20008" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + ascorbate[r] + H+[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "PMID:14962674" 4 "R10053" "RXN-13689" "" "MNXR116004"
"MA_20009" "O2[r] + L-gulono-1,4-lactone[r] => H2O2[r] + L-xylo-Hexulonolactone[r]" 1000 0 "1.1.3.8" "Ascorbate and aldarate metabolism" "Gulo" "" 2 "R03184" "L-GULONOLACTONE-OXIDASE-RXN" "" "MNXR140097"
"MA_20010" "PAPS[c] + aniline[c] => PAP[c] + Benzenamine sulfate[c] + H+[c]" 1000 0 "2.8.2.3" "Amine sulfotransferase" "Sult3a1" "" 2 "R01861" "" "" "MNXR107208"
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