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style/feat: add metsNoComp column to mets info
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haowang-bioinfo committed Jun 23, 2021
1 parent 43bb829 commit a0bb881
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2 changes: 1 addition & 1 deletion code/masterScriptMouseGEM.m
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Expand Up @@ -44,6 +44,6 @@
end

save('../model/Mouse-GEM.mat', 'mouseGEM');
writeYaml(mouseGEM, '../model/Mouse-GEM.yml');
exportYaml(mouseGEM, '../model/Mouse-GEM.yml');
exportModel(mouseGEM, '../model/Mouse-GEM.xml');

22 changes: 11 additions & 11 deletions data/mouseSpecificMets.tsv
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mets metNames metFormulas metCharges compartments metKEGGID metPubChemID metChEBIID metMetaCycID metMetaNetXID
"MAM20001g" "N-Acetyllactosamine" "C14H25NO11" 0 "g" "C00611" "3885" "CHEBI:16153" "BETA-D-GALACTOSYL-ETCETERA-GLUCOSAMINE" "MNXM729847"
"MAM20002g" "alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine" "C20H35NO16" 0 "g" "C04847" "7404" "CHEBI:18217;CHEBI:62327" "ALPHA-D-GALACTOSYL-13-BETA-D-GALACTOS" "MNXM735633"
"MAM20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "7864" "CHEBI:58585" "L-ALLO-THREONINE" "MNXM2125"
"MAM20004c" "Benzenamine sulfate" "C6H6NO3S" -1 "c" "C06011" "440879" "CHEBI:3024" "BENZENAMINE-SULFATE" "MNXM8327"
"MAM20005p" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "p" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761"
"MAM20006p" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "p" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778"
"MAM20007r" "L-xylo-Hexulonolactone" "C6H8O6" 0 "r" "C03289" "6146" "CHEBI:73681" "" "MNXM731654"
"MAM01368r" "ascorbate" "C6H7O6" -1 "r" "C00072" "" "CHEBI:38290" "ASCORBATE" "MNXM727871"
"MAM01104p" "5-hydroxyisourate" "C5H4N4O4" 0 "p" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137"
"MAM10018p" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "p" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805"
mets metNames metFormulas metCharges compartments metKEGGID metPubChemID metChEBIID metMetaCycID metMetaNetXID metsNoComp
"MAM20001g" "N-Acetyllactosamine" "C14H25NO11" 0 "g" "C00611" "3885" "CHEBI:16153" "BETA-D-GALACTOSYL-ETCETERA-GLUCOSAMINE" "MNXM729847" "MAM20001"
"MAM20002g" "alpha-D-Galactosyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosamine" "C20H35NO16" 0 "g" "C04847" "7404" "CHEBI:18217;CHEBI:62327" "ALPHA-D-GALACTOSYL-13-BETA-D-GALACTOS" "MNXM735633" "MAM20002"
"MAM20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "7864" "CHEBI:58585" "L-ALLO-THREONINE" "MNXM2125" "MAM20003"
"MAM20004c" "Benzenamine sulfate" "C6H6NO3S" -1 "c" "C06011" "440879" "CHEBI:3024" "BENZENAMINE-SULFATE" "MNXM8327" "MAM20004"
"MAM20005p" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "p" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761" "MAM20005"
"MAM20006p" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "p" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778" "MAM20006"
"MAM20007r" "L-xylo-Hexulonolactone" "C6H8O6" 0 "r" "C03289" "6146" "CHEBI:73681" "" "MNXM731654" "MAM20007"
"MAM01368r" "ascorbate" "C6H7O6" -1 "r" "C00072" "" "CHEBI:38290" "ASCORBATE" "MNXM727871" "MAM01368"
"MAM01104p" "5-hydroxyisourate" "C5H4N4O4" 0 "p" "C11821" "" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137" "MAM01104"
"MAM10018p" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "p" "C12248" "" "CHEBI:58639" "CPD-5821" "MNXM1805" "MAM10018"

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