Merge pull request #18 from SysBioChalmers/fix/masterScript

Fix: only annotate model before SBML export
SysBioChalmers · Oct 10, 2022 · 53fac6b · 53fac6b
2 parents 3fa4b07 + c35bd01
commit 53fac6b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/code/masterScriptMouseGEM.m b/code/masterScriptMouseGEM.m
@@ -43,9 +43,9 @@
     exportTsvFile(metAssoc,'../model/metabolites.tsv');
 end
 
-mouseGEM = annotateGEM(mouseGEM,'../model',{'rxn','met'});  % add annotation data to structure
-mouseGEM.id = regexprep(mouseGEM.id,'-','');  % remove dash from model ID since it causes problems with SBML I/O
 save('../model/Mouse-GEM.mat', 'mouseGEM');
 exportYaml(mouseGEM, '../model/Mouse-GEM.yml');
+mouseGEM = annotateGEM(mouseGEM,'../model',{'rxn','met'});  % add annotation data to structure
+mouseGEM.id = regexprep(mouseGEM.id,'-','');  % remove dash from model ID since it causes problems with SBML I/O
 exportModel(mouseGEM, '../model/Mouse-GEM.xml');