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Fix-Phe, Tyr and Trp biosynthesis and Porphyrin metabolism #899

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merged 5 commits into from
Dec 17, 2024
Merged

Fix-Phe, Tyr and Trp biosynthesis and Porphyrin metabolism #899

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e5cb0e6
Fix-GPR curation for Phe, Tyr and Trp biosynthesis and Porphyrin meta…
JHL-452b Nov 5, 2024
0ec1ab0
chore: add macaw test result
JHL-452b Nov 5, 2024
9e71ae7
Merge branch 'develop' into Fix_Phe_Tyr_Trp_biosynthesis-Porphyrin_me…
edkerk Nov 5, 2024
e742017
chore: add gene essentiality test result
edkerk Nov 5, 2024
69015a3
Merge remote-tracking branch 'origin/develop' into Fix_Phe_Tyr_Trp_bi…
edkerk Dec 17, 2024
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26 changes: 13 additions & 13 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -83612,7 +83612,7 @@
- MAM03136c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand All @@ -83632,7 +83632,7 @@
- MAM03136c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand Down Expand Up @@ -83733,7 +83733,7 @@
- MAM02555c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand Down Expand Up @@ -83771,7 +83771,7 @@
- MAM02553c: -1
- lower_bound: -1000
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000147576 or ENSG00000172955 or ENSG00000187758 or ENSG00000196344 or ENSG00000196616 or ENSG00000197894 or ENSG00000198099 or ENSG00000248144"
- gene_reaction_rule: "ENSG00000147576 or ENSG00000172955 or ENSG00000187758 or ENSG00000196344 or ENSG00000197894 or ENSG00000198099 or ENSG00000248144"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.1.1.1"
Expand Down Expand Up @@ -83849,7 +83849,7 @@
- MAM02553c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand All @@ -83869,7 +83869,7 @@
- MAM02555c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand Down Expand Up @@ -83986,7 +83986,7 @@
- MAM02555c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand Down Expand Up @@ -84307,7 +84307,7 @@
- MAM02555c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254"
- gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.2.1.5"
Expand Down Expand Up @@ -84491,7 +84491,7 @@
- MAM02041c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000117592 or ENSG00000121053 or ENSG00000130508 or ENSG00000167419"
- gene_reaction_rule: "ENSG00000121053 or ENSG00000167419"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.11.1.7"
Expand Down Expand Up @@ -84527,7 +84527,7 @@
- MAM02041c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000005381 or ENSG00000115705 or ENSG00000117592 or ENSG00000121053 or ENSG00000167419"
- gene_reaction_rule: "ENSG00000005381 or ENSG00000115705 or ENSG00000121053 or ENSG00000167419"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.11.1.7;1.11.1.8;1.11.2.2"
Expand Down Expand Up @@ -84765,7 +84765,7 @@
- MAM02682c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000070614 or ENSG00000111962 or ENSG00000115526 or ENSG00000124302 or ENSG00000130540 or ENSG00000135702 or ENSG00000136720 or ENSG00000138653 or ENSG00000140835 or ENSG00000147119 or ENSG00000153936 or ENSG00000154080 or ENSG00000154252 or ENSG00000164100 or ENSG00000166507 or ENSG00000171004 or ENSG00000173597 or ENSG00000175040 or ENSG00000175229 or ENSG00000183196 or ENSG00000185352 or ENSG00000197093 or ENSG00000198075 or ENSG00000198203"
- gene_reaction_rule: "ENSG00000070614 or ENSG00000111962 or ENSG00000115526 or ENSG00000130540 or ENSG00000147119 or ENSG00000153936 or ENSG00000154080 or ENSG00000154252 or ENSG00000164100 or ENSG00000173597 or ENSG00000185352 or ENSG00000197093 or ENSG00000198075 or ENSG00000198203"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "2.8.2.-"
Expand Down Expand Up @@ -85410,7 +85410,7 @@
- MAM02724c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000117592 or ENSG00000121053 or ENSG00000130508 or ENSG00000167419"
- gene_reaction_rule: "ENSG00000121053"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.11.1.7"
Expand Down Expand Up @@ -229667,7 +229667,7 @@
- MAM02751m: 1
- lower_bound: -1000
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000151093"
- gene_reaction_rule: ""
- rxnNotes: ""
- rxnFrom: "Recon3D"
- eccodes: "3.1.3.66"
Expand Down
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