Code

feat: gene essentiality workflow#675

Code

Merged

edkerk merged 24 commits intodevelopSysBioChalmers/Human-GEM:developfrom feat/gene-essentiality-workflowSysBioChalmers/Human-GEM:feat/gene-essentiality-workflowCopy head branch name to clipboardOct 28, 2024

+369-237

Commits

Commits on Jul 7, 2023

• feat: gene essentiality workflow with pr comment

  mihai-sysbio

  committed
  07329bc

Commits on Oct 6, 2023

• Merge branch 'develop' into feat/gene-essentiality-workflow

  mihai-sysbio

  committed
  c3db9c5

• chore: expand workflow targets

  mihai-sysbio

  authored
  1bba24d

• fix: add to matlab path

  mihai-sysbio

  committed
  aff8211

Commits on Oct 18, 2024

• fix: style of macaw summary output

  edkerk

  committed
  cd98819

• Merge branch 'feat/macaw_output' into feat/gene-essentiality-workflow

  edkerk

  committed
  c83e572

Commits on Oct 19, 2024

• feat: post and store gene essentiality results

  edkerk

  committed
  7f8c8ae

• fix: model path and allow 2 workflow comments

  edkerk

  committed
  497bd7b

• chore: add macaw test result

  

  edkerk

  authored and

  github-actions[bot]

  committed
  5409a5d

• fix: use recent RAVEN and gurobi

  edkerk

  committed
  3ac5563

• fix: avoid Penr statistic calculation

  edkerk

  committed
  61f9b12

• fix: missing ) in gene-essentiality.yml

  edkerk

  committed
  ff716cb

• chore: add gene essentiality test result

  

  edkerk

  authored and

  github-actions[bot]

  committed
  88fbdfc

Commits on Oct 20, 2024

• fix: gene-essentiality.yml output format

  edkerk

  committed
  0ef23be

• fix: location of data/testResults/README.md

  edkerk

  committed
  91ed960

• chore: add macaw test result

  

  edkerk

  authored and

  github-actions[bot]

  committed
  79c258a

Commits on Oct 21, 2024

• fix: test workflow including branch update

  edkerk

  committed
  ac5c47c

• fix: correct git-auto-commit-action@v5

  edkerk

  committed
  6371196

• chore: add gene essentiality test result

  

  edkerk

  authored and

  github-actions[bot]

  committed
  e5342bd

• fix: run all Hart et al. 2015 tests

  edkerk

  committed
  e56fbe8

• fix: missing )

  edkerk

  committed
  ca406a6

• chore: add gene essentiality test result

  

  edkerk

  authored and

  github-actions[bot]

  committed
  a5409dc

• fix: only git stash pop if stash exist

  edkerk

  committed
  b847199

Commits on Oct 23, 2024

• fix gene-essentiality ' not "

  edkerk

  committed
  43d1d4d