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fix: update GPRs for Cytochrome C Oxidoreductase and remove MAR04456 that is duplicated to MAR04458+MAR04589 #532

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merged 8 commits into from
Apr 18, 2023
Merged

fix: update GPRs for Cytochrome C Oxidoreductase and remove MAR04456 that is duplicated to MAR04458+MAR04589 #532

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84b3cbd
fix: update GPRs for Cytochrome C Oxidoreductase, as proposed in #526
haowang-bioinfo Apr 14, 2023
8e4f2d2
fix: remove MAR04456 that's duplicate to MAR04458+MAR04589
haowang-bioinfo Apr 14, 2023
c94e0c6
data: sync deleted rxn to deprecatedReactions.tsv
haowang-bioinfo Apr 14, 2023
62a9e89
fix: assign comp-specific GPR to MAR04454, MAR04458, MAR04589
haowang-bioinfo Apr 14, 2023
f8f6706
fix-gene: remove ENSG00000136381 from MAR04454
haowang-bioinfo Apr 14, 2023
d73f951
fix-rxn: block MAR13081 ub=lb=0
haowang-bioinfo Apr 16, 2023
e9b0f73
doc: log the purpose and blocking of MAR13081
haowang-bioinfo Apr 18, 2023
f06c144
Merge remote-tracking branch 'origin/develop' into fix/updateComplexI…
haowang-bioinfo Apr 18, 2023
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4 changes: 2 additions & 2 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -94384,7 +94384,7 @@
- MAM02630m: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000111775 and ENSG00000112695 and ENSG00000126267 and ENSG00000127184 and ENSG00000131143 and ENSG00000131174 and ENSG00000135940 and ENSG00000164919 and ENSG00000176340 and ENSG00000178741 and ENSG00000198712 and ENSG00000198804 and ENSG00000198938 and ENSG00000189043"
- gene_reaction_rule: "ENSG00000198804 and ENSG00000198712 and ENSG00000198938 and (ENSG00000131143 or ENSG00000131055) and ENSG00000178741 and ENSG00000135940 and (ENSG00000111775 or ENSG00000156885) and (ENSG00000126267 or ENSG00000160471) and ENSG00000164919 and (ENSG00000161281 or ENSG00000112695) and ENSG00000131174 and ENSG00000170516 and ENSG00000127184 and ENSG00000176340 and ENSG00000189043"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.9.3.1"
Expand Down Expand Up @@ -302290,7 +302290,7 @@
- MAM02631m: 0.02
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000111775 and ENSG00000112695 and ENSG00000126267 and ENSG00000127184 and ENSG00000131055 and ENSG00000131143 and ENSG00000131174 and ENSG00000135940 and ENSG00000156885 and ENSG00000160471 and ENSG00000161281 and ENSG00000164919 and ENSG00000170516 and ENSG00000176340 and ENSG00000178741 and ENSG00000187581 and ENSG00000198712 and ENSG00000198804 and ENSG00000198938"
- gene_reaction_rule: "ENSG00000198804 and ENSG00000198712 and ENSG00000198938 and (ENSG00000131143 or ENSG00000131055) and ENSG00000178741 and ENSG00000135940 and (ENSG00000111775 or ENSG00000156885) and (ENSG00000126267 or ENSG00000160471) and ENSG00000164919 and (ENSG00000161281 or ENSG00000112695) and ENSG00000131174 and ENSG00000170516 and ENSG00000127184 and ENSG00000176340 and ENSG00000189043"
- rxnNotes: ""
- rxnFrom: "Recon3D"
- eccodes: ""
Expand Down