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(re) example of correction to apply in order to avoid conflict during MNXref conversion #358

Merged
merged 12 commits into from
Mar 1, 2022
Merged

(re) example of correction to apply in order to avoid conflict during MNXref conversion #358

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6d1a33b
changing chebi xref of MAM00097s
ANiknejad Jan 21, 2022
8d54fb4
removing xref hmdb:HMDB0006248 from MAM00097s
ANiknejad Jan 21, 2022
3e7ae41
removing xref 'gluala' from MAM00097s
ANiknejad Jan 21, 2022
7663d97
reverting to previous state of the metabolites.tsv file without modif…
ANiknejad Jan 26, 2022
1145a72
removing xref C03740 from MAM00097, will then avoid conflict during c…
ANiknejad Jan 26, 2022
3e6380c
MAM01656 dehydrodolichol mapped to CHEBI:136960
ANiknejad Feb 3, 2022
ad00c16
correction, MAM01657 dehydrodolichol_diphosphate mapped to CHEBI:1369…
ANiknejad Feb 3, 2022
246cbc8
MAM00813p (3-ketopristanoyl-CoA) remapped to CHEBI:57291 (was mapped …
ANiknejad Feb 10, 2022
5304f56
Update metabolites.tsv
ANiknejad Feb 25, 2022
3de63a0
Update metabolites.tsv
ANiknejad Feb 25, 2022
041ad02
Update metabolites.tsv
ANiknejad Feb 25, 2022
14d2bb0
Merge branch 'develop' into develop
mihai-sysbio Feb 28, 2022
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16 changes: 8 additions & 8 deletions model/metabolites.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -183,7 +183,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa
"MAM00095p" "MAM00095" "c226coa" "C16169" "" "CHEBI:65132" "" "LMFA07050050" "CE4827" "" "CE4827;c226coa" "MNXM3234;MNXM91778" "m00095p" "m00095p"
"MAM00095r" "MAM00095" "c226coa" "C16169" "" "CHEBI:65132" "" "LMFA07050050" "CE4827" "" "CE4827;c226coa" "MNXM3234;MNXM91778" "m00095r" "m00095r"
"MAM00096c" "MAM00096" "" "C02100" "" "" "" "" "" "" "M00096" "MNXM92760" "m00096c" "m00096c"
"MAM00097s" "MAM00097" "gluala" "C03740" "HMDB06248" "CHEBI:50619" "440103" "" "" "" "gluala" "MNXM59390" "m00097s" "m00097s"
"MAM00097e" "MAM00097" "gluala" "" "HMDB06248" "CHEBI:50619" "440103" "" "" "" "gluala" "MNXM59390" "m00097s" "m00097s"
"MAM00098c" "MAM00098" "" "" "" "" "" "" "CE2566" "" "CE2566" "MNXM162637" "m00098c" "m00098c"
"MAM00098p" "MAM00098" "" "" "" "" "" "" "CE2566" "" "CE2566" "MNXM162637" "m00098p" "m00098p"
"MAM00098r" "MAM00098" "" "" "" "" "" "" "CE2566" "" "CE2566" "MNXM162637" "m00098r" "m00098r"
Expand Down Expand Up @@ -1312,7 +1312,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa
"MAM00810s" "MAM00810" "" "C05394" "" "CHEBI:27453" "440653" "" "" "HC01440" "HC01440" "MNXM4339" "m00810s" "m00810s"
"MAM00811c" "MAM00811" "" "" "" "" "" "" "CE4811" "" "CE4811" "MNXM164249" "m00811c" "m00811c"
"MAM00812s" "MAM00812" "" "C05403" "" "" "" "" "" "HC01446" "HC01446" "MNXM36578" "m00812s" "m00812s"
"MAM00813p" "MAM00813" "" "C07297" "HMDB02057" "CHEBI:28542" "441253" "" "" "" "C07297" "MNXM4346" "m00813p" "m00813p"
"MAM00813x" "MAM00813" "" "C07297" "HMDB02057" "CHEBI:57291" "441253" "" "" "" "C07297" "MNXM4346" "m00813p" "m00813p"
"MAM00814p" "MAM00814" "" "" "" "" "" "LMFA07050068" "CE4826" "" "CE4826" "MNXM91783" "m00814p" "m00814p"
"MAM00815c" "MAM00815" "mercplac" "C05823" "" "CHEBI:28580" "160645" "" "" "" "mercplac" "MNXM6822;MNXM91416" "m00815c" "m00815c"
"MAM00816c" "MAM00816" "mercplaccys" "" "HMDB06512" "" "193536" "" "" "" "mercplaccys" "MNXM10053" "m00816c" "m00816c"
Expand Down Expand Up @@ -2674,10 +2674,10 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa
"MAM01613g" "MAM01613" "core8" "" "" "" "" "" "" "" "core8" "MNXM16842" "m01613g" "m01613g"
"MAM01613c" "MAM01613" "core8" "" "" "" "" "" "" "" "core8" "MNXM16842" "m01613c" "m01613c"
"MAM01613s" "MAM01613" "core8" "" "" "" "" "" "" "" "core8" "MNXM16842" "m01613s" "m01613s"
"MAM01614c" "MAM01614" "crtstrn" "" "" "CHEBI:101161" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614c" "m01614c"
"MAM01614m" "MAM01614" "crtstrn" "" "" "CHEBI:101161" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614m" "m01614m"
"MAM01614r" "MAM01614" "crtstrn" "" "" "CHEBI:101161" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614r" "m01614r"
"MAM01614s" "MAM01614" "crtstrn" "" "" "CHEBI:101161" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614s" "m01614s"
"MAM01614c" "MAM01614" "crtstrn" "" "" "CHEBI:16827" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614c" "m01614c"
"MAM01614m" "MAM01614" "crtstrn" "" "" "CHEBI:16827" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614m" "m01614m"
"MAM01614r" "MAM01614" "crtstrn" "" "" "CHEBI:16827" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614r" "m01614r"
"MAM01614e" "MAM01614" "crtstrn" "" "" "CHEBI:16827" "" "LMST02030092" "" "" "crtstrn" "MNXM162953;MNXM859" "m01614s" "m01614s"
"MAM01615c" "MAM01615" "crtsl" "C00735" "HMDB00063" "CHEBI:17650" "657311" "LMST02030001" "" "" "crtsl" "MNXM162531;MNXM543" "m01615c" "m01615c"
"MAM01615m" "MAM01615" "crtsl" "C00735" "HMDB00063" "CHEBI:17650" "657311" "LMST02030001" "" "" "crtsl" "MNXM162531;MNXM543" "m01615m" "m01615m"
"MAM01615r" "MAM01615" "crtsl" "C00735" "HMDB00063" "CHEBI:17650" "657311" "LMST02030001" "" "" "crtsl" "MNXM162531;MNXM543" "m01615r" "m01615r"
Expand Down Expand Up @@ -2717,7 +2717,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa
"MAM01630m" "MAM01630" "cytd" "C00475" "HMDB00089" "CHEBI:17562" "6175" "" "" "HC00381" "cytd" "MNXM338" "m01630m" "m01630m"
"MAM01630n" "MAM01630" "cytd" "C00475" "HMDB00089" "CHEBI:17562" "6175" "" "" "HC00381" "cytd" "MNXM338" "m01630n" "m01630n"
"MAM01630s" "MAM01630" "cytd" "C00475" "HMDB00089" "CHEBI:17562" "6175" "" "" "HC00381" "cytd" "MNXM338" "m01630s" "m01630s"
"MAM01631m" "MAM01631" "" "C00524" "" "CHEBI:18070" "" "" "" "" "M01631" "MNXM5749" "m01631m" "m01631m"
"MAM01631m" "MAM01631" "" "C00524" "" "CHEBI:83739" "" "" "" "" "M01631" "MNXM5749" "m01631m" "m01631m"
"MAM01632c" "MAM01632" "csn" "C00380" "HMDB00630" "CHEBI:16040" "597" "" "" "" "csn" "MNXM761" "m01632c" "m01632c"
"MAM01632s" "MAM01632" "csn" "C00380" "HMDB00630" "CHEBI:16040" "597" "" "" "" "csn" "MNXM761" "m01632s" "m01632s"
"MAM01633c" "MAM01633" "3aib__D" "C01205" "" "CHEBI:16320" "5459822" "" "" "HC00715" "3aib_D" "MNXM162802;MNXM786" "m01633c" "m01633c"
Expand Down Expand Up @@ -2772,7 +2772,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa
"MAM01655c" "MAM01655" "dhdascb" "C00425" "HMDB01264" "CHEBI:17242" "210328" "" "" "" "dhdascb" "MNXM250" "m01655c" "m01655c"
"MAM01655s" "MAM01655" "dhdascb" "C00425" "HMDB01264" "CHEBI:17242" "210328" "" "" "" "dhdascb" "MNXM250" "m01655s" "m01655s"
"MAM01656c" "MAM01656" "dedol__L" "" "" "" "" "" "" "" "dedol_L" "MNXM148199" "m01656c" "m01656c"
"MAM01657c" "MAM01657" "dedoldp__L" "C05859" "" "" "" "" "" "" "dedoldp_L" "MNXM148197" "m01657c" "m01657c"
"MAM01657c" "MAM01657" "dedoldp__L" "C05859" "" "CHEBI:136960" "" "" "" "" "dedoldp_L" "MNXM148197" "m01657c" "m01657c"
"MAM01658c" "MAM01658" "dedolp__L" "" "" "" "" "" "" "" "dedolp_L" "MNXM148198" "m01658c" "m01658c"
"MAM01659c" "MAM01659" "dheas" "C04555" "HMDB01032" "CHEBI:16814" "12594" "" "" "HC01314" "dheas" "MNXM991" "m01659c" "m01659c"
"MAM01659r" "MAM01659" "dheas" "C04555" "HMDB01032" "CHEBI:16814" "12594" "" "" "HC01314" "dheas" "MNXM991" "m01659r" "m01659r"
Expand Down