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Merge branch 'develop' into fix/lipoic_acid_biosynth
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edkerk authored Dec 23, 2024
2 parents 121b587 + 5e7c68c commit d16cbf7
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Showing 10 changed files with 12 additions and 1,069 deletions.
2 changes: 1 addition & 1 deletion code/DepMapGeneEss/PrepDepMapData.m
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Expand Up @@ -37,7 +37,7 @@
save('data/arrayDataDepMap.mat','arrayDataDepMap');

%Generate ftINIT prepData - only needs to be done once. Can take up to an hour to run
model = importYaml('../../model/Human-GEM.yml');
model = readYAMLmodel('../../model/Human-GEM.yml');
[model.grRules, skipped] = simplifyGrRules(model.grRules, true);%takes a few minutes to run
prepData = prepHumanModelForftINIT(model, true, '../../data/metabolicTasks/metabolicTasks_Essential.txt', '../../model/reactions.tsv');
save('data/prepDataGeneSymbols.mat', 'prepData')
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