Remove Duplicate V-Type ATPase Reaction (#829)

* fix: removed MAR07799 for being a less-accurate version of MAR00080 * fix: added ATP6AP1 to GPR of MAR00080 so it was still associated with at least one reaction * feat: adds new reference for MAR00080 * chore: add macaw test result * fix: stoichiometry of V-ATPase * chore: add macaw test result --------- Co-authored-by: Eduard Kerkhoven <[email protected]> Co-authored-by: edkerk <[email protected]>
SysBioChalmers · Oct 17, 2024 · 760b376 · 760b376
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diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv
@@ -299,3 +299,4 @@ rxns	rxnKEGGID	rxnBiGGID	rxnEHMNID	rxnHepatoNET1ID	rxnREACTOMEID	rxnRecon3DID	rx
 "MAR04205"	""	""	"RT0084"	""	""	"HMR_4205"	""	"HMR_4205"	"RCR20258"	""	0	""	""	"HMR_4205"
 "MAR08745"	""	"THMMPtm"	""	""	""	""	"MNXR104822"	"HMR_8745"	"RCR20669"	""	0	""	""	"HMR_8745"
 "MAR08747"	""	"THMPPtm"	""	""	""	""	"MNXR104824"	"HMR_8747"	"RCR20670"	""	0	""	""	"HMR_8747"
+"MAR07799"	""	"ATPasel"	""	""	""	""	"MNXR96136"	"HMR_7799"	"RCR20334"	""	0	""	""	"HMR_7799"
diff --git a/data/macawResults/README.md b/data/macawResults/README.md
@@ -2,7 +2,7 @@
 
 The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/macaw) `dead_end_test` and `duplicate_test` tests.
 
-The test results shown here were obtained by the GitHub Actions run in **PR #840**, and will be updated by any subsequent PR. Summary results are shown as a comment in the corresponding PR.
+The test results shown here were obtained by the GitHub Actions run in **PR #829**, and will be updated by any subsequent PR. Summary results are shown as a comment in the corresponding PR.
 
 ### `dead_end_test`
 Looks for metabolites in Human-GEM that can only be produced by all reactions they participate in or only consumed, then identifies all reactions that are prevented from sustaining steady-state fluxes because of each of these dead-end metabolites. The simplest case of a dead-end metabolite is one that only participates in a single reaction. Also flags all reversible reactions that can only carry fluxes in a single direction because one of their metabolites can either only be consumed or only be produced by all other reactions it participates in.