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Merge pull request #816 from JHL-452b/fix-Correction_of_unbalanced_re…
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fix: modified unbalance reactions
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@feiranl
feiranl authored Apr 26, 2024
2 parents eefe972 + 7930323 commit 56b345d
Showing 1 changed file with 29 additions and 38 deletions.
67 changes: 29 additions & 38 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -66422,7 +66422,7 @@
- name: "(5Z,8Z,11Z,14Z)-eicosatetraenedioate"
- compartment: "n"
- formula: "C20H28O4"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand All @@ -66438,7 +66438,7 @@
- name: "(5Z,8Z,11Z,14Z)-eicosatetraenedioate"
- compartment: "c"
- formula: "C20H28O4"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand Down Expand Up @@ -66558,7 +66558,7 @@
- name: "19-hydroxy-(5Z,8Z,11Z)-eicosatrienoate"
- compartment: "r"
- formula: "C20H33O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand Down Expand Up @@ -66590,7 +66590,7 @@
- name: "19-hydroxy-(5Z,8Z,11Z)-eicosatrienoate"
- compartment: "i"
- formula: "C20H33O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand Down Expand Up @@ -66638,7 +66638,7 @@
- name: "19-hydroxy-(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate"
- compartment: "r"
- formula: "C20H29O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand All @@ -66654,23 +66654,23 @@
- name: "19-hydroxy-(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate"
- compartment: "i"
- formula: "C20H29O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20026r"
- name: "21-hydroxy-(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate"
- compartment: "r"
- formula: "C22H31O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20027i"
- name: "21-hydroxy-(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate"
- compartment: "i"
- formula: "C22H31O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand All @@ -66686,7 +66686,7 @@
- name: "11-hydroxydodecanoate"
- compartment: "r"
- formula: "C12H23O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand All @@ -66702,23 +66702,23 @@
- name: "11-hydroxydodecanoate"
- compartment: "i"
- formula: "C12H23O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20030r"
- name: "13-hydroxytetradecanoate"
- compartment: "r"
- formula: "C14H27O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20031i"
- name: "13-hydroxytetradecanoate"
- compartment: "i"
- formula: "C14H27O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand Down Expand Up @@ -66878,31 +66878,31 @@
- name: "(E)-hexadec-2-enoate"
- compartment: "r"
- formula: "C16H29O2"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20042c"
- name: "(E)-hexadec-2-enoate"
- compartment: "c"
- formula: "C16H29O2"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20043r"
- name: "22-oxodocosanoate"
- compartment: "r"
- formula: "C22H41O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
- id: "MAM20044c"
- name: "22-oxodocosanoate"
- compartment: "c"
- formula: "C22H41O3"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand Down Expand Up @@ -67030,7 +67030,7 @@
- name: "(2E,6E)-farnesoate"
- compartment: "r"
- formula: "C15H23O2"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand All @@ -67046,7 +67046,7 @@
- name: "(2E,6E)-farnesoate"
- compartment: "c"
- formula: "C15H23O2"
- charge: 0
- charge: -1
- inchis: ""
- metFrom: ""
- !!omap
Expand Down Expand Up @@ -67341,7 +67341,7 @@
- id: "MAM01657r"
- name: "dehydrodolichol-diphosphate"
- compartment: "r"
- formula: "C100H161O7P2"
- formula: "C40H65O7P2"
- charge: -3
- inchis: ""
- metFrom: ""
Expand Down Expand Up @@ -67637,7 +67637,7 @@
- id: "MAM20082m"
- name: "S-propanoyldihydrolipoamide"
- compartment: "m"
- formula: ""
- formula: "C11H23N1O2S2"
- charge: 0
- inchis: ""
- metFrom: ""
Expand Down Expand Up @@ -94679,8 +94679,8 @@
- name: "superoxide:superoxide oxidoreductase"
- metabolites: !!omap
- MAM02039x: -2
- MAM01803x: 1
- MAM01802x: 1
- MAM02630x: 1
- MAM02041x: 1
- MAM02631x: -2
- lower_bound: 0
- upper_bound: 1000
Expand Down Expand Up @@ -117551,7 +117551,7 @@
- MAM01285c: 1
- MAM01371c: -1
- MAM01597c: 1
- MAM02039c: 1
- MAM02039c: 2
- MAM02040c: -2
- MAM02746x: 1
- MAM02747c: -1
Expand Down Expand Up @@ -161337,8 +161337,8 @@
- name: "hydrogen-peroxide:hydrogen-peroxide oxidoreductase"
- metabolites: !!omap
- MAM02040x: 2
- MAM01803x: -2
- MAM01802x: 1
- MAM02041x: -2
- MAM02630x: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000121691 or ENSG00000166016"
Expand Down Expand Up @@ -223112,7 +223112,6 @@
- MAM01285c: 1
- MAM01371c: -1
- MAM02039c: 1
- MAM02039e: -1
- MAM02040c: -1
- MAM02200c: 1
- MAM02200e: -1
Expand Down Expand Up @@ -286846,10 +286845,10 @@
- MAM01597x: -2
- MAM02039x: 2
- MAM02040x: -2
- MAM01803x: 2
- MAM02041x: 2
- MAM02552x: -2
- MAM02553x: 2
- MAM01802x: -1
- MAM02630x: -1
- MAM03236x: -1
- MAM03238x: 1
- lower_bound: 0
Expand Down Expand Up @@ -301841,7 +301840,6 @@
- id: "MAR20021"
- name: "MAR20021"
- metabolites: !!omap
- MAM02039r: 1
- MAM02040r: 1
- MAM02457r: -1
- MAM02630r: -1
Expand All @@ -301862,7 +301860,6 @@
- id: "MAR20022"
- name: "MAR20022"
- metabolites: !!omap
- MAM02039i: 1
- MAM02040i: 1
- MAM02457i: -1
- MAM02630i: -1
Expand All @@ -301884,7 +301881,6 @@
- name: "MAR20023"
- metabolites: !!omap
- MAM01784r: -1
- MAM02039r: 1
- MAM02040r: 1
- MAM02630r: -1
- MAM20019r: -1
Expand All @@ -301905,7 +301901,6 @@
- name: "MAR20024"
- metabolites: !!omap
- MAM01784i: -1
- MAM02039i: 1
- MAM02040i: 1
- MAM02630i: -1
- MAM20019i: -1
Expand All @@ -301926,7 +301921,6 @@
- name: "MAR20025"
- metabolites: !!omap
- MAM01689r: -1
- MAM02039r: 1
- MAM02040r: 1
- MAM02630r: -1
- MAM20019r: -1
Expand All @@ -301947,7 +301941,6 @@
- name: "MAR20026"
- metabolites: !!omap
- MAM01689i: -1
- MAM02039i: 1
- MAM02040i: 1
- MAM02630i: -1
- MAM20019i: -1
Expand All @@ -301967,7 +301960,6 @@
- id: "MAR20027"
- name: "MAR20027"
- metabolites: !!omap
- MAM02039r: 1
- MAM02040r: 1
- MAM02344r: -1
- MAM02630r: -1
Expand All @@ -301988,7 +301980,6 @@
- id: "MAR20028"
- name: "MAR20028"
- metabolites: !!omap
- MAM02039i: 1
- MAM02040i: 1
- MAM02344i: -1
- MAM02630i: -1
Expand All @@ -302009,7 +302000,6 @@
- id: "MAR20029"
- name: "MAR20029"
- metabolites: !!omap
- MAM02039r: 1
- MAM02040r: 1
- MAM02494r: -1
- MAM02630r: -1
Expand All @@ -302030,7 +302020,6 @@
- id: "MAR20030"
- name: "MAR20030"
- metabolites: !!omap
- MAM02039i: 1
- MAM02040i: 1
- MAM02494i: -1
- MAM02630i: -1
Expand Down Expand Up @@ -303481,6 +303470,7 @@
- MAM02007m: -1
- MAM02040m: -1
- MAM02439m: 1
- MAM02039m: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000125246"
Expand All @@ -303501,6 +303491,7 @@
- MAM02039m: 1
- MAM02046m: -1
- MAM02751m: 1
- MAM01422m: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000076555"
Expand Down

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