fix: two of the new reactions were accidentally identical

SysBioChalmers · Oct 18, 2023 · 402ecb6 · 402ecb6
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commit 402ecb6
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diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -304952,24 +304952,6 @@
     - !!omap
       - id: "MAR20139"
       - name: "MAR20139"
-      - metabolites: !!omap
-          - MAM01623c: -1
-          - MAM01623m: 1
-          - MAM01948c: 1
-          - MAM01948m: -1
-      - lower_bound: -1000
-      - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000114120"
-      - rxnNotes: ""
-      - rxnFrom: ""
-      - eccodes: ""
-      - references: "PMID:25320081"
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR20140"
-      - name: "MAR20140"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -304986,8 +304968,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20141"
-      - name: "MAR20141"
+      - id: "MAR20140"
+      - name: "MAR20140"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305004,8 +304986,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20142"
-      - name: "MAR20142"
+      - id: "MAR20141"
+      - name: "MAR20141"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305022,8 +305004,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20143"
-      - name: "MAR20143"
+      - id: "MAR20142"
+      - name: "MAR20142"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305040,8 +305022,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20144"
-      - name: "MAR20144"
+      - id: "MAR20143"
+      - name: "MAR20143"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305058,8 +305040,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20145"
-      - name: "MAR20145"
+      - id: "MAR20144"
+      - name: "MAR20144"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305076,8 +305058,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20146"
-      - name: "MAR20146"
+      - id: "MAR20145"
+      - name: "MAR20145"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305094,8 +305076,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20147"
-      - name: "MAR20147"
+      - id: "MAR20146"
+      - name: "MAR20146"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305112,8 +305094,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20148"
-      - name: "MAR20148"
+      - id: "MAR20147"
+      - name: "MAR20147"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305130,8 +305112,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20149"
-      - name: "MAR20149"
+      - id: "MAR20148"
+      - name: "MAR20148"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305148,8 +305130,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20150"
-      - name: "MAR20150"
+      - id: "MAR20149"
+      - name: "MAR20149"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305166,8 +305148,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20151"
-      - name: "MAR20151"
+      - id: "MAR20150"
+      - name: "MAR20150"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305184,8 +305166,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20152"
-      - name: "MAR20152"
+      - id: "MAR20151"
+      - name: "MAR20151"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305202,8 +305184,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20153"
-      - name: "MAR20153"
+      - id: "MAR20152"
+      - name: "MAR20152"
       - metabolites: !!omap
           - MAM01424c: -1
           - MAM01424m: 1
@@ -305220,8 +305202,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20154"
-      - name: "MAR20154"
+      - id: "MAR20153"
+      - name: "MAR20153"
       - metabolites: !!omap
           - MAM01645c: -1
           - MAM01645m: 1
@@ -305238,8 +305220,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20155"
-      - name: "MAR20155"
+      - id: "MAR20154"
+      - name: "MAR20154"
       - metabolites: !!omap
           - MAM01643c: -1
           - MAM01643m: 1
@@ -305256,8 +305238,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20156"
-      - name: "MAR20156"
+      - id: "MAR20155"
+      - name: "MAR20155"
       - metabolites: !!omap
           - MAM02034c: -1
           - MAM02034m: 1
@@ -305274,8 +305256,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20157"
-      - name: "MAR20157"
+      - id: "MAR20156"
+      - name: "MAR20156"
       - metabolites: !!omap
           - MAM01948c: -1
           - MAM01948m: 1
@@ -305292,8 +305274,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20158"
-      - name: "MAR20158"
+      - id: "MAR20157"
+      - name: "MAR20157"
       - metabolites: !!omap
           - MAM01688c: -1
           - MAM01688m: 1
@@ -305310,8 +305292,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20159"
-      - name: "MAR20159"
+      - id: "MAR20158"
+      - name: "MAR20158"
       - metabolites: !!omap
           - MAM01680c: -1
           - MAM01680m: 1
@@ -305328,8 +305310,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20160"
-      - name: "MAR20160"
+      - id: "MAR20159"
+      - name: "MAR20159"
       - metabolites: !!omap
           - MAM02193c: -1
           - MAM02193m: 1
@@ -305346,8 +305328,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20161"
-      - name: "MAR20161"
+      - id: "MAR20160"
+      - name: "MAR20160"
       - metabolites: !!omap
           - MAM01753c: -1
           - MAM01753m: 1
@@ -305364,8 +305346,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20162"
-      - name: "MAR20162"
+      - id: "MAR20161"
+      - name: "MAR20161"
       - metabolites: !!omap
           - MAM01747c: -1
           - MAM01747m: 1
@@ -305382,8 +305364,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20163"
-      - name: "MAR20163"
+      - id: "MAR20162"
+      - name: "MAR20162"
       - metabolites: !!omap
           - MAM03106c: -1
           - MAM03106m: 1
@@ -305400,8 +305382,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20164"
-      - name: "MAR20164"
+      - id: "MAR20163"
+      - name: "MAR20163"
       - metabolites: !!omap
           - MAM01756c: -1
           - MAM01756m: 1
@@ -305418,8 +305400,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20165"
-      - name: "MAR20165"
+      - id: "MAR20164"
+      - name: "MAR20164"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01623m: 1
@@ -305434,8 +305416,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20166"
-      - name: "MAR20166"
+      - id: "MAR20165"
+      - name: "MAR20165"
       - metabolites: !!omap
           - MAM02034c: -1
           - MAM02034m: 1
@@ -305450,8 +305432,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20167"
-      - name: "MAR20167"
+      - id: "MAR20166"
+      - name: "MAR20166"
       - metabolites: !!omap
           - MAM01753c: -1
           - MAM01753m: 1
@@ -305466,8 +305448,8 @@
           - "Transport reactions"
       - confidence_score: 0
     - !!omap
-      - id: "MAR20168"
-      - name: "MAR20168"
+      - id: "MAR20167"
+      - name: "MAR20167"
       - metabolites: !!omap
           - MAM03130c: -1
           - MAM03130m: 1

diff --git a/model/reactions.tsv b/model/reactions.tsv
@@ -13004,4 +13004,3 @@ rxns	rxnKEGGID	rxnBiGGID	rxnEHMNID	rxnHepatoNET1ID	rxnREACTOMEID	rxnRecon3DID	rx
 "MAR20165"	""	""	""	""	""	""	""	""	""	""	0	""	""	""
 "MAR20166"	""	""	""	""	""	""	""	""	""	""	0	""	""	""
 "MAR20167"	""	""	""	""	""	""	""	""	""	""	0	""	""	""
-"MAR20168"	""	""	""	""	""	""	""	""	""	""	0	""	""	""