[CI] minimal check on get_data() #210
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: run | |
| on: | |
| push: | |
| branches: ['**'] | |
| tags: ['**'] | |
| paths-ignore: ['.gitignore', 'LICENSE*', 'LICENCE*', 'README.md', 'SIRF_data_preparation/*'] | |
| jobs: | |
| check: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/synerbi/sirf:edge | |
| options: --user root # https://github.com/actions/checkout/issues/956 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| shell: bash -el {0} | |
| run: | | |
| source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh | |
| pip install git+https://github.com/TomographicImaging/Hackathon-000-Stochastic-QualityMetrics | |
| if test -f apt.txt; then | |
| sudo apt-get update | |
| xargs -a apt.txt sudo apt-get install -y | |
| fi | |
| if test -f environment.yml; then | |
| sed -i '/^name:.*/d' environment.yml | |
| conda env update -n base | |
| fi | |
| if test -f requirements.txt; then | |
| pip install -r requirements.txt | |
| fi | |
| conda list | |
| - name: Test imports | |
| shell: bash -el {0} | |
| run: | | |
| source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh | |
| curl -fsSL https://raw.githubusercontent.com/SyneRBI/PETRIC/main/petric.py > petric.py | |
| test -f main.py || ln -s main_ISTA.py main.py | |
| python <<EOF | |
| import petric | |
| from main import Submission, submission_callbacks | |
| from cil.optimisation.algorithms import Algorithm | |
| assert issubclass(Submission, Algorithm) | |
| assert isinstance(submission_callbacks, list) | |
| assert all(callable(callback) for callback in submission_callbacks) | |
| data = petric.get_data() | |
| assert data.OSEM_image.max() > 0 | |
| assert data.reference_image.max() > 0 | |
| assert data.FOV_mask.max() > 0 | |
| EOF | |
| full: | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: [self-hosted, docker, cuda] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: {fetch-depth: 0, submodules: recursive} | |
| - run: petric |