Publish page to GitHub

SydneyBioX · Aug 8, 2024 · 73d80e1 · 73d80e1
1 parent 189fa7a
commit 73d80e1
Show file tree

Hide file tree

Showing 234 changed files with 609 additions and 109,821 deletions.
diff --git a/.RData b/.RData
diff --git a/.Rhistory b/.Rhistory
diff --git a/.Rproj.user/6A54F822/pcs/files-pane.pper b/.Rproj.user/6A54F822/pcs/files-pane.pper
@@ -5,5 +5,5 @@
             "ascending": true
         }
     ],
-    "path": "C:/Users/mtor0581/SPDS_Projects/SpatialSimBench_website"
+    "path": "C:/Users/mtor0581/SPDS_Projects"
 }
diff --git a/.Rproj.user/6A54F822/pcs/source-pane.pper b/.Rproj.user/6A54F822/pcs/source-pane.pper
@@ -1,3 +1,3 @@
 {
-    "activeTab": 7
+    "activeTab": 1
 }
diff --git a/.Rproj.user/6A54F822/pcs/windowlayoutstate.pper b/.Rproj.user/6A54F822/pcs/windowlayoutstate.pper
@@ -2,13 +2,13 @@
     "left": {
         "splitterpos": 373,
         "topwindowstate": "NORMAL",
-        "panelheight": 921,
-        "windowheight": 959
+        "panelheight": 922,
+        "windowheight": 960
     },
     "right": {
         "splitterpos": 400,
         "topwindowstate": "NORMAL",
-        "panelheight": 921,
-        "windowheight": 959
+        "panelheight": 922,
+        "windowheight": 960
     }
 }
diff --git a/...ources/session-61a2533f/1770ADA9-contents → ...oj.user/6A54F822/quarto-crossref/7E886166 b/...ources/session-61a2533f/1770ADA9-contents → ...oj.user/6A54F822/quarto-crossref/7E886166
diff --git a/.Rproj.user/6A54F822/quarto-crossref/INDEX b/.Rproj.user/6A54F822/quarto-crossref/INDEX
@@ -0,0 +1 @@
+C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto_shiny%2Findex.qmd="7E886166"
diff --git a/...A54F822/sources/session-61a2533f/2B06C9AD → .Rproj.user/6A54F822/sources/per/t/2B06C9AD b/...A54F822/sources/session-61a2533f/2B06C9AD → .Rproj.user/6A54F822/sources/per/t/2B06C9AD
@@ -3,7 +3,7 @@
     "path": "C:/Users/mtor0581/SPDS_Projects/spatial_simulationV3/spatial_simulationV3/funkyheatmap_new.Rmd",
     "project_path": null,
     "type": "r_markdown",
-    "hash": "0",
+    "hash": "23306638",
     "contents": "",
     "dirty": false,
     "created": 1722829988524.0,
@@ -12,8 +12,8 @@
     "properties": {
         "source_window_id": "",
         "Source": "Source",
-        "cursorPosition": "7,0",
-        "scrollLine": "0"
+        "cursorPosition": "126,45",
+        "scrollLine": "109"
     },
     "folds": "",
     "lastKnownWriteTime": 1722816565,

diff --git a/...ources/session-61a2533f/2B06C9AD-contents → .../6A54F822/sources/per/t/2B06C9AD-contents b/...ources/session-61a2533f/2B06C9AD-contents → .../6A54F822/sources/per/t/2B06C9AD-contents
diff --git a/...A54F822/sources/session-61a2533f/AB873B71 → .Rproj.user/6A54F822/sources/per/t/AB873B71 b/...A54F822/sources/session-61a2533f/AB873B71 → .Rproj.user/6A54F822/sources/per/t/AB873B71
@@ -3,7 +3,7 @@
     "path": "C:/Users/mtor0581/SPDS_Projects/Analysis/data_json.Rmd",
     "project_path": null,
     "type": "r_markdown",
-    "hash": "1685919074",
+    "hash": "1840595186",
     "contents": "",
     "dirty": false,
     "created": 1722824388041.0,
@@ -12,15 +12,15 @@
     "properties": {
         "source_window_id": "",
         "Source": "Source",
-        "cursorPosition": "168,0",
-        "scrollLine": "154"
+        "cursorPosition": "151,64",
+        "scrollLine": "124"
     },
     "folds": "",
-    "lastKnownWriteTime": 1722999619,
+    "lastKnownWriteTime": 1723074320,
     "encoding": "UTF-8",
     "collab_server": "",
     "source_window": "",
-    "last_content_update": 1722999619200,
+    "last_content_update": 1723074320432,
     "read_only": false,
     "read_only_alternatives": []
 }
diff --git a/...ources/session-61a2533f/AB873B71-contents → .../6A54F822/sources/per/t/AB873B71-contents b/...ources/session-61a2533f/AB873B71-contents → .../6A54F822/sources/per/t/AB873B71-contents
@@ -123,21 +123,21 @@ palettes <- tribble(
 
 #Export csv
 ```{r}
-curr_dir <- "/users/mtor0581/SPDS_Projects/SpatialSimBench_website/results/data/"
+curr_dir <- "/users/mtor0581/SPDS_Projects/SpatialSimBench_Quarto_shiny/results/data/"
 
 # write_csv(column_info_detailed, file = paste0(curr_dir, "column_info.csv"))
 write_csv(column_groups, file = paste0(curr_dir, "column_groups.csv"))
 # 
 # palettes$colours <- sapply(palettes$colours, function(x) paste(x, collapse=","))
-# write.csv(palettes, file = paste0(curr_dir, "palettes.csv"), row.names = FALSE)
+write_csv(palettes, file = paste0(curr_dir, "palettes.csv"))
 
 final_data <- read_csv(paste0(curr_dir, "data_sorted_final_NOTCHANGE.csv")) 
-final_data$id <- NULL
+#final_data$id <- NULL
 final_data$...1 <- NULL
 
 adaptors <- c("Yes","No", "Yes", "No", "Yes","Yes","No","Yes","Yes","Yes","No","Yes","Yes")
 
-final_data <- final_data %>% add_column(adaptor = adaptors, .before = "overall_summary") %>% relocate(method, .before = "adaptor")
+final_data <- final_data %>% add_column(adaptor = adaptors, .before = "overall_summary") #%>% relocate(method, .before = "adaptor")
 
 # Function to format numeric columns to 2 decimal places
 format_numeric_columns <- function(df) {
@@ -149,7 +149,7 @@ format_numeric_columns <- function(df) {
 # Apply the function to the data
 final_data <- format_numeric_columns(final_data)
 
-write_csv(final_data, file = paste0(curr_dir, "final_data2.csv"))
+write_csv(final_data, file = paste0(curr_dir, "final_data.csv"))
 
 ```
 

diff --git a/.Rproj.user/6A54F822/sources/prop/18B801C0 b/.Rproj.user/6A54F822/sources/prop/18B801C0
@@ -1,6 +1,6 @@
 {
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "168,0",
-    "scrollLine": "154"
+    "cursorPosition": "151,64",
+    "scrollLine": "124"
 }
diff --git a/.Rproj.user/6A54F822/sources/prop/55D856A0 b/.Rproj.user/6A54F822/sources/prop/55D856A0
@@ -0,0 +1,4 @@
+{
+    "source_window_id": "",
+    "Source": "Source"
+}
diff --git a/.Rproj.user/6A54F822/sources/prop/63A5CF31 b/.Rproj.user/6A54F822/sources/prop/63A5CF31
@@ -1,4 +1,6 @@
 {
     "source_window_id": "",
-    "Source": "Source"
+    "Source": "Source",
+    "cursorPosition": "0,0",
+    "scrollLine": "0"
 }
diff --git a/.Rproj.user/6A54F822/sources/prop/89AC0B30 b/.Rproj.user/6A54F822/sources/prop/89AC0B30
@@ -0,0 +1,12 @@
+{
+    "rmdVisualMode": "true",
+    "rmdVisualWrapConfigured": "true",
+    "source_window_id": "",
+    "Source": "Source",
+    "docOutlineVisible": "1",
+    "cursorPosition": "152,0",
+    "scrollLine": "144",
+    "rmdVisualModeLocation": "8105:4415.5",
+    "rmdVisualCollapsedChunks": "295",
+    "last_setup_crc32": "61a2533f873c8129"
+}
diff --git a/.Rproj.user/6A54F822/sources/prop/A9AA99B5 b/.Rproj.user/6A54F822/sources/prop/A9AA99B5
@@ -0,0 +1,7 @@
+{
+    "tempName": "Untitled1",
+    "source_window_id": "",
+    "Source": "Source",
+    "cursorPosition": "1,12",
+    "scrollLine": "0"
+}
diff --git a/.Rproj.user/6A54F822/sources/prop/AB55CC73 b/.Rproj.user/6A54F822/sources/prop/AB55CC73
@@ -0,0 +1,6 @@
+{
+    "source_window_id": "",
+    "Source": "Source",
+    "cursorPosition": "25,55",
+    "scrollLine": "0"
+}
diff --git a/.Rproj.user/6A54F822/sources/prop/B0C500FA b/.Rproj.user/6A54F822/sources/prop/B0C500FA
@@ -0,0 +1,6 @@
+{
+    "source_window_id": "",
+    "Source": "Source",
+    "cursorPosition": "17,16",
+    "scrollLine": "0"
+}
diff --git a/.Rproj.user/6A54F822/sources/prop/BD31454F b/.Rproj.user/6A54F822/sources/prop/BD31454F
@@ -1,6 +1,6 @@
 {
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "7,0",
-    "scrollLine": "0"
+    "cursorPosition": "126,45",
+    "scrollLine": "109"
 }
diff --git a/.Rproj.user/6A54F822/sources/prop/INDEX b/.Rproj.user/6A54F822/sources/prop/INDEX
@@ -1,5 +1,6 @@
 C%3A%2FUsers%2Fmtor0581%2FDownloads%2Fmetric_testcase.Rmd="10A8B893"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FAnalysis%2Fdata_json.Rmd="18B801C0"
+C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBench_ojs%2F_quarto.yml="AB55CC73"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBench_website%2FSpatialSimBench_website.qmd="66090432"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBench_website%2F_quarto.yml="C7B45FB6"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBench_website%2Fdata_json.Rmd="C1AA3DEF"
@@ -12,4 +13,8 @@ C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBench_website%2Fresults%2Fst
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBench_website%2Fstyles.css="D77CBF57"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimBenchmark_shinyapp%2Fserver.R="0FD9B534"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto%2Fresults%2Fdata%2Ffinal_data.JSON="C9E2DC4A"
+C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto_shiny%2F_quarto.yml="B0C500FA"
+C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto_shiny%2Findex.qmd="55D856A0"
+C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto_shiny%2Fresults%2Findex.qmd="89AC0B30"
+C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto_shiny%2Fresults%2Fstyles.css="A9AA99B5"
 C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2Fspatial_simulationV3%2Fspatial_simulationV3%2Ffunkyheatmap_new.Rmd="BD31454F"
diff --git a/.Rproj.user/6A54F822/sources/session-61a2533f/14CF391D b/.Rproj.user/6A54F822/sources/session-61a2533f/14CF391D
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		C%3A%2FUsers%2Fmtor0581%2FSPDS_Projects%2FSpatialSimbench_Quarto_shiny%2Findex.qmd="7E886166"