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@popensesame popensesame released this 09 Jun 18:46
v2.0.1
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Learn about vigilant mode.

Changes

  • New feature: model exploration notebook using the sciope library
  • Implemented unit tests and continuous integration with GitHub Actions.
  • Updated parameter sweep workflows to use the more efficient Variable SSA C Solver in GillesPy2.
  • Updated documentation pages, including the Quickstart.
  • Added a new example model: Lotkavolterra Oscillator.

Bug Fixes

  • Assignment rules, rate rules, and function definitions are now constructed correctly in generated jupyter notebooks.
  • Errors are now correctly propogated to StochSS when converting an SBML model to a StochSS model.
  • Workflow settings and Model settings are now stored separately on the user's filesystem.
  • JupyterHub implementation now imposes resource limits on normal users (4G memory, 2 logical CPUs per user), with the ability to add exceptions for power users.
  • Reaction details now updates correctly when zero parameters are present in a model.
  • Actions button on the File Browser page now updates correctly when new files are automatically selected.
  • Copies of files without file extensions are now duplicated correctly.
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