Merge pull request #1000 from StochSS/develop

Release of StochSS 2.1

.dockerignore

@@ -2,4 +2,3 @@
 .gitignore
 examples/
 internal/
-README.md

.env

@@ -2,4 +2,6 @@ DOCKER_STOCHSS_IMAGE=stochss-lab
 
 DOCKER_BASE_IMAGE=jupyter/minimal-notebook:latest
 
+DOCKER_WORKING_DIR=$(PWD)/local_data
+
 JUPYTER_CONFIG_DIR=/opt/stochss-config/.jupyter

.github/workflows/pylint_on_pull_request.yml

@@ -0,0 +1,59 @@
+name: PyLint On Pull Request
+on: [pull_request]
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Set Up Python
+      uses: actions/setup-python@v2
+    - name: Install PyLint
+      run: pip install --upgrade pylint
+    - name: Checkout
+      uses: actions/checkout@v2
+      with:
+        fetch-depth: 0
+    - name: Checkout Head
+      run: git checkout $HEAD_REF
+      env:
+        HEAD_REF: ${{ github.event.pull_request.head.ref }}
+    - name: Checkout Base
+      run: git checkout $BASE_REF
+      env:
+        BASE_REF: ${{ github.event.pull_request.base.ref }}
+    - name: Get Base Lint Score
+      run: |
+        echo ::set-env name=BASE_LINT::$(git diff --name-only --diff-filter=M $HEAD_REF | grep -E "\.py" | xargs pylint | grep -E -o "at [0-9.-]+" | grep -E -o [0-9.-]+)
+      env:
+        HEAD_REF: ${{ github.event.pull_request.head.ref }}
+      if: always()
+    - name: Checkout Head
+      run: git checkout $HEAD_REF
+      env:
+        HEAD_REF: ${{ github.event.pull_request.head.ref }}
+    - name: Get Lint Delta Sign (+/-)
+      run: echo ::set-env name=PASSING_SCORE::$(git diff --name-only --diff-filter=M $BASE_REF | grep -E "\.py" | xargs pylint | grep -Eo "10, [+-]" | grep -Eo [+-] )
+      env:
+        BASE_REF: ${{ github.event.pull_request.base.ref }}
+      if: always()
+    - name: Get Head Lint Score
+      run: echo ::set-env name=HEAD_LINT::$(git diff --name-only --diff-filter=M $BASE_REF | grep -E "\.py" | xargs pylint | grep -E -o "at [0-9.-]+" | grep -E -o [0-9.-]+)
+      env:
+        BASE_REF: ${{ github.event.pull_request.base.ref }}
+      if: always()
+    - name: Get Added Files Lint Score
+      run: echo ::set-env name=ADDED_LINT::$(git diff --name-only --diff-filter=A $BASE_REF | grep -E "\.py" | xargs pylint | grep -E -o "at [0-9.-]+" | grep -E -o [0-9.-]+)
+      env:
+        BASE_REF: ${{ github.event.pull_request.base.ref }}
+      if: always()
+    - name: Display Results
+      run: |
+        echo "Lint of modified files in base:"
+        echo ${{ env.BASE_LINT }}
+        echo "Lint of modified files in head:"
+        echo ${{ env.HEAD_LINT }}
+        echo "Lint of files added by head:"
+        echo ${{ env.ADDED_LINT }}
+      if: always()
+    - name: Fail If Negative Delta
+      run: exit 1
+      if: env.PASSING_SCORE == '-'

.gitignore

@@ -1,3 +1,4 @@
+local_data/
 node_modules/
 .power_users
 *.bundle.js
@@ -6,6 +7,7 @@ stochss-file-browser.html
 stochss-model-editor.html
 stochss-workflow-manager.html
 stochss-workflow-selection.html
+stochss-project-manager.html
 *.swp
 *.swo
 package-lock.json