R #456
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name: R | |
on: | |
push: | |
branches: | |
- master | |
- branch-[0-9]+.[0-9]+ | |
pull_request: | |
schedule: | |
# Run this workflow daily at 13:00 UTC | |
- cron: "0 13 * * *" | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event_name }}-${{ github.head_ref || github.ref }} | |
cancel-in-progress: true | |
env: | |
PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION: python | |
jobs: | |
r: | |
runs-on: ubuntu-latest | |
timeout-minutes: 120 | |
if: github.event_name == 'push' || (github.event_name == 'schedule' && github.repository == 'mlflow-automation/mlflow') || (github.event_name == 'pull_request' && github.event.pull_request.draft == false) | |
defaults: | |
run: | |
shell: bash --noprofile --norc -exo pipefail {0} | |
working-directory: mlflow/R/mlflow | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
submodules: recursive | |
- uses: ./.github/actions/setup-python | |
- uses: ./.github/actions/setup-pyenv | |
- uses: ./.github/actions/setup-java | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: "4.3.0" | |
# This step dumps the current set of R dependencies and R version into files to be used | |
# as a cache key when caching/restoring R dependencies. | |
- name: Dump dependencies | |
run: | | |
Rscript -e 'source(".dump-r-dependencies.R", echo = TRUE)' | |
- name: Get OS name | |
id: os-name | |
run: | | |
# `os_name` will be like "Ubuntu-20.04.1-LTS" | |
os_name=$(lsb_release -ds | sed 's/\s/-/g') | |
echo "os-name=$os_name" >> $GITHUB_OUTPUT | |
- name: Cache R packages | |
uses: actions/cache@v3 | |
continue-on-error: true | |
# https://github.com/actions/cache/issues/810 | |
env: | |
SEGMENT_DOWNLOAD_TIMEOUT_MINS: 5 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
# We cache R dependencies based on a tuple of the current OS, the R version, and the list of | |
# R dependencies | |
key: ${{ steps.os-name.outputs.os-name }}-${{ hashFiles('mlflow/R/mlflow/R-version') }}-0-${{ hashFiles('mlflow/R/mlflow/depends.Rds') }} | |
- name: Install dependencies | |
run: | | |
Rscript -e 'source(".install-deps.R", echo=TRUE)' | |
- name: Set USE_R_DEVEL | |
run: | | |
if [ "$GITHUB_EVENT_NAME" = "schedule" ]; then | |
USE_R_DEVEL=true | |
elif [ "$GITHUB_EVENT_NAME" = "pull_request" ]; then | |
# Use r-devel on a pull request targeted to a release branch | |
USE_R_DEVEL=$([[ $GITHUB_BASE_REF =~ branch-[0-9]+\.[0-9]+$ ]] && echo true || echo false) | |
else | |
# Use r-devel on a push to a release branch | |
USE_R_DEVEL=$([[ $GITHUB_REF_NAME =~ branch-[0-9]+\.[0-9]+$ ]] && echo true || echo false) | |
fi | |
echo "USE_R_DEVEL=$USE_R_DEVEL" >> $GITHUB_ENV | |
- name: Build package | |
run: | | |
./build-package.sh | |
- name: Create test environment | |
run: | | |
pip install -e $(git rev-parse --show-toplevel) | |
H2O_VERSION=$(Rscript -e "print(packageVersion('h2o'))" | grep -Eo '[0-9][0-9.]+') | |
# test-keras-model.R fails with tensorflow>=2.13.0 | |
pip install xgboost 'tensorflow<2.13.0' "h2o==$H2O_VERSION" | |
Rscript -e 'source(".install-mlflow-r.R", echo=TRUE)' | |
- name: Run tests | |
env: | |
LINTR_COMMENT_BOT: false | |
run: | | |
cd tests | |
export MLFLOW_HOME=$(git rev-parse --show-toplevel) | |
Rscript -e 'source("../.run-tests.R", echo=TRUE)' |