pytest #2065

	name: pytest

	on:
	# Every push
	push:

	# When requested manually
	workflow_dispatch:

	# Every morning at 3am -- how does it know which branch to run??
	schedule:
	- cron: '0 3 * * *'


	jobs:
	build:

	runs-on: ubuntu-latest
	if: "!contains(github.event.head_commit.message, 'skip ci')"

	steps:
	- uses: actions/checkout@v2

	- name: Checkout submodules
	shell: bash
	run: \|
	auth_header="$(git config --local --get http.https://github.com/.extraheader)"
	git submodule sync --recursive
	git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1

	- name: Pull and run docker 🐋
	shell: bash
	run: \|
	docker pull stanfordaha/garnet:latest
	docker run -d -it --name CONTAINER stanfordaha/garnet:latest bash
	docker exec CONTAINER /bin/bash -c "rm -rf /aha/garnet"
	docker exec CONTAINER /bin/bash -c "source /aha/bin/activate; pip install psutil"
	docker cp ../garnet CONTAINER:/aha/garnet

	- name: Run tests ⚙️
	shell: bash
	run: \|
	docker exec -i CONTAINER bash -c "/aha/garnet/.github/scripts/run_pytest.sh"

	- name: Upload Coverage
	shell: bash
	# CODECOV_TOKEN secret stored at https://github.com/StanfordAHA/garnet/settings/secrets/actions
	run: \|
	docker exec -i CONTAINER bash -c "cd /aha/garnet/ && bash <(curl -s https://codecov.io/bash) -t ${{ secrets.CODECOV_TOKEN }}"

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