Trilinos and PETSc interfaces (#30) and Docker containers (#211) #9

	name: test Ubuntu
	on: [push, pull_request]
	jobs:
	test:
	strategy:
	matrix:
	name: [Ubuntu-20.04, Ubuntu-22.04]
	include:
	- name: Ubuntu-20.04
	version: ubuntu-20.04
	image: ubuntu20
	- name: Ubuntu-22.04
	version: ubuntu-22.04
	image: ubuntu22
	runs-on: ${{ matrix.version }}
	container: dcodoni/lib:${{ matrix.image }}
	steps:
	- uses: actions/checkout@v3
	- name: Build svFSIplus
	run: \|
	if [ -d "build" ]; then
	rm -rf "build"
	fi
	mkdir build
	cd build
	cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_USE_TRILINOS:BOOL=ON ..
	make -j2
	cd ..
	- name: Build svFSIplus (PETSc)
	run: \|
	if [ -d "build-petsc" ]; then
	rm -rf "build-petsc"
	fi
	mkdir build-petsc
	cd build-petsc
	cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_PETSC_DIR:STRING=/petsc ..
	make -j2
	cd ..
	- name: Run integration tests
	run: \|
	git config --global --add safe.directory /__w/svFSIplus/svFSIplus
	git lfs pull
	cd tests
	conda run -n svfsiplus pytest -rPv --durations=0
	- name: Run unit tests
	run: \|
	cd build/svFSI-build/Source/svFSI
	ctest --verbose
	- name: Generate code coverage
	run: \|
	cd build/svFSI-build
	make coverage
	- name: Save coverage report
	uses: actions/upload-artifact@v3
	with:
	name: coverage_report
	path: build/svFSI-build/coverage
	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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