Merge remote-tracking branch 'origin/Support-GPT4All-Server-API-#1187…

…0' into Support-GPT4All-Server-API-JabRef#11870

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,10 +1,5 @@
-<!-- 
-Describe the changes you have made here: what, why, ... 
-Link the issue that will be closed, e.g., "Closes #333".
-If your PR closes a koppor issue, link it using its URL, e.g., "Closes https://github.com/koppor/jabref/issues/47".
-"Closes" is a keyword GitHub uses to link PRs with issues; do not change it.
-Don't reference an issue in the PR title because GitHub does not support auto-linking there.
--->
+Describe the changes you have made here: what, why, ...
+Link the issue that will be closed, e.g., "Closes #333". If your PR closes a koppor issue, link it using its URL, e.g., "Closes https://github.com/koppor/jabref/issues/47".
 
 ### Mandatory checks
 
@@ -13,6 +8,7 @@ Don't reference an issue in the PR title because GitHub does not support auto-li
 - [x] done; [ ] not done / not applicable
 -->
 
+- [x] I own the copyright of the code submitted and I licence it under the [MIT license](https://github.com/JabRef/jabref/blob/main/LICENSE)
 - [ ] Change in `CHANGELOG.md` described in a way that is understandable for the average user (if applicable)
 - [ ] Tests created for changes (if applicable)
 - [ ] Manually tested changed features in running JabRef (always required)

.github/ghprcomment.yml

@@ -34,3 +34,8 @@
   message: |
     While the PR was in progress, a new version of JabRef has been released.
     You have to merge `upstream/main` and move your entry in `CHANGELOG.md` up to the section `## [Unreleased]`.
+- jobName: 'Unit tests'
+  message: |
+    JUnit tests are failing. In the area "Some checks were not successful", locate "Tests / Unit tests (pull_request)" and click on "Details". This brings you to the test output.
+
+    You can then run these tests in IntelliJ to reproduce the failing tests locally. We offer a quick test running howto in the section [Final build system checks](https://devdocs.jabref.org/getting-into-the-code/guidelines-for-setting-up-a-local-workspace/intellij-12-build.html#final-build-system-checks) in our setup guide.

.github/workflows/assign-issue.yml

@@ -0,0 +1,56 @@
+name: Assign Issue
+
+on:
+  schedule:
+    - cron: 0 0 * * *
+  issue_comment:
+    types: [created]
+  workflow_dispatch:
+
+jobs:
+  assign:
+    runs-on: ubuntu-latest
+    permissions:
+      issues: write
+    steps:
+      - name: Assign the user or unassign stale assignments
+        id: assign
+        uses: takanome-dev/assign-issue-action@beta
+        with:
+          github_token: '${{ secrets.GITHUB_TOKEN }}'
+          days_until_unassign: 30
+          maintainers: koppor, Siedlerchr, ThiloteE, calixtus, HoussemNasri
+          assigned_comment: |
+            👋 Hey @{{ handle }}, thank you for your interest in this issue! 🎉
+
+            We're excited to have you on board. Start by exploring our [Contributing](https://github.com/JabRef/jabref/blob/main/CONTRIBUTING.md) guidelines, and don't forget to check out our [workspace setup guidelines](https://devdocs.jabref.org/getting-into-the-code/guidelines-for-setting-up-a-local-workspace) to get started smoothly.
+
+            In case you encounter failing tests during development, please check our [developer FAQs](https://devdocs.jabref.org/code-howtos/faq.html)!
+
+            Having any questions or issues? Feel free to ask here on GitHub. Need help setting up your local workspace? Join the conversation on [JabRef's Gitter chat](https://gitter.im/JabRef/jabref). And don't hesitate to open a (draft) pull request early on to show the direction it is heading towards. This way, you will receive valuable feedback.
+
+            Happy coding! 🚀
+
+            ⏳ Please note, you will be automatically unassigned if the issue isn't closed within **{{ total_days }} days** (by **{{ unassigned_date }}**). A maintainer can also add the "**{{ pin_label }}**"" label to prevent automatic unassignment.
+      - name: Move Issue to "Assigned" Column in "Candidates for University Projects"
+        if: steps.assign.outputs.assigned == 'yes'
+        uses: m7kvqbe1/github-action-move-issues@feat/skip-if-not-in-project-flag
+        with:
+          github-token: ${{ secrets.GH_TOKEN_ACTION_MOVE_ISSUE }}
+          project-url: "https://github.com/orgs/JabRef/projects/3"
+          target-labels: "📍 Assigned"
+          target-column: "Assigned"
+          ignored-columns: ""
+          default-column: "Free to take"
+          skip-if-not-in-project: true
+      - name: Move Issue to "Assigned" Column in "Good First Issues"
+        if: steps.assign.outputs.assigned == 'yes'
+        uses: m7kvqbe1/github-action-move-issues@feat/skip-if-not-in-project-flag
+        with:
+          github-token: ${{ secrets.GH_TOKEN_ACTION_MOVE_ISSUE }}
+          project-url: "https://github.com/orgs/JabRef/projects/5"
+          target-labels: "📍 Assigned"
+          target-column: "Assigned"
+          ignored-columns: ""
+          default-column: "Free to take"
+          skip-if-not-in-project: true

.github/workflows/automerge.yml

@@ -10,13 +10,13 @@ jobs:
     runs-on: ubuntu-latest
     # Run only if PR is inside JabRef's main repository and created by dependabot or by an update workflow
     if: >
-      (github.repository == 'JabRef/jabref') && 
+      (github.repository == 'JabRef/jabref') &&
       (github.event.pull_request.head.repo.full_name == 'JabRef/jabref') &&
       (
         (github.actor == 'dependabot[bot]') ||
         (
-          startsWith(github.event.pull_request.title, '[Bot] ') || 
-          startsWith(github.event.pull_request.title, 'Bump ') || 
+          startsWith(github.event.pull_request.title, '[Bot] ') ||
+          startsWith(github.event.pull_request.title, 'Bump ') ||
           startsWith(github.event.pull_request.title, 'New Crowdin updates') ||
           startsWith(github.event.pull_request.title, 'Update Gradle Wrapper from')
         )
@@ -26,9 +26,9 @@ jobs:
         run: gh pr review --approve "$PR_URL"
         env:
           PR_URL: ${{github.event.pull_request.html_url}}
-          GITHUB_TOKEN: ${{secrets.GH_TOKEN_JABREF_MACHINE_PR_APPROVE}}
+          GH_TOKEN: ${{secrets.GH_TOKEN_JABREF_MACHINE_PR_APPROVE}}
       - name: Merge PR
         run: gh pr merge --auto --squash "$PR_URL"
         env:
           PR_URL: ${{github.event.pull_request.html_url}}
-          GITHUB_TOKEN: ${{secrets.GH_TOKEN_UPDATE_GRADLE_WRAPPER}}
+          GH_TOKEN: ${{secrets.GH_TOKEN_UPDATE_GRADLE_WRAPPER}}

.github/workflows/check-links.yml

@@ -31,7 +31,7 @@ jobs:
           restore-keys: cache-lychee-
       - name: Link Checker
         id: lychee
-        uses: lycheeverse/lychee-action@v1.10.0
+        uses: lycheeverse/lychee-action@v2.0.2
         with:
           fail: true
           args: --accept '200,201,202,203,204,403,429,500' --max-concurrency 1 --cache --no-progress --exclude-all-private './**/*.md'

.github/workflows/cleanup-pr.yml

@@ -37,8 +37,8 @@ jobs:
           key: ${{ secrets.buildJabRefPrivateKey }}
       - name: Update PR comment
         if: steps.checksecrets.outputs.secretspresent == 'YES'
-        uses: thollander/actions-comment-pull-request@v2
+        uses: thollander/actions-comment-pull-request@v3
         with:
-          comment_tag: download-link
+          comment-tag: download-link
           message: The build for this PR is no longer available. Please visit <https://builds.jabref.org/main/> for the latest build.
           mode: upsert

.github/workflows/deployment-arm64.yml

@@ -205,7 +205,7 @@ jobs:
         if: ${{ (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && (steps.checksecrets.outputs.secretspresent == 'YES') && ((matrix.os == 'ubuntu-latest') || ((matrix.os == 'macos-14') && !((startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)))) }}
         shell: bash
         run: |
-          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/
+          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/ || true
       - name: Upload to GitHub workflow artifacts store (macOS)
         if: (matrix.os == 'macos-14') && (steps.checksecrets.outputs.secretspresent == 'YES') && (startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)
         uses: actions/upload-artifact@v4

.github/workflows/deployment-jdk-ea.yml

@@ -266,7 +266,7 @@ jobs:
         shell: cmd
         # for rsync installed by chocolatey, we need the ssh.exe delivered with that installation
         run: |
-          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/jdk-ea && rsync" -e 'C:\ProgramData\chocolatey\lib\rsync\tools\bin\ssh.exe -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/jdk-ea/
+          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/jdk-ea && rsync" -e 'C:\ProgramData\chocolatey\lib\rsync\tools\bin\ssh.exe -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/jdk-ea/ || true
       - name: Upload to builds.jabref.org (linux, macOS)
         if: (matrix.os != 'windows-latest') && (steps.checksecrets.outputs.secretspresent == 'YES') && (github.ref == 'refs/heads/main')
         shell: bash

.github/workflows/deployment.yml

@@ -242,15 +242,15 @@ jobs:
         shell: cmd
         # for rsync installed by chocolatey, we need the ssh.exe delivered with that installation
         run: |
-          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'C:\ProgramData\chocolatey\lib\rsync\tools\bin\ssh.exe -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/
+          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'C:\ProgramData\chocolatey\lib\rsync\tools\bin\ssh.exe -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/ || true
       - name: Upload to builds.jabref.org (linux, macOS)
         # macOS: Negated condition of "Upload to GitHub workflow artifacts store (macOS)"
         #        Reason: We either upload the non-notarized files - or notarize the files later (and upload these later)
         # needs to be on one line; multi line does not work
         if: ${{ (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && (steps.checksecrets.outputs.secretspresent == 'YES') && ((matrix.os == 'ubuntu-latest') || ((matrix.os == 'macos-13') && !((startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)))) }}
         shell: bash
         run: |
-          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/
+          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/ || true
       - name: Upload to GitHub workflow artifacts store (macOS)
         if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES') && (startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)
         uses: actions/upload-artifact@v4
@@ -287,11 +287,11 @@ jobs:
           BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
       - name: Comment PR
         if: (steps.checksecrets.outputs.secretspresent == 'YES')
-        uses: thollander/actions-comment-pull-request@v2
+        uses: thollander/actions-comment-pull-request@v3
         with:
           message: |
             The build of this PR is available at <https://builds.jabref.org/pull/${{ github.event.pull_request.number }}/merge>.
-          comment_tag: download-link
+          comment-tag: download-link
           mode: recreate
   notarize: # outsourced in a separate job to be able to rerun if this fails for timeouts
     name: macOS notarization