Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
[error] /development/projects/05_ds/spark/bdg-sequila/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala:102:16: not found: value spark_bam [error] import spark_bam._, hammerlab.path._ [error] ^ [error] /development/projects/05_ds/spark/bdg-sequila/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala:102:29: not found: value hammerlab [error] import spark_bam._, hammerlab.path._ [error] ^ [error] /development/projects/05_ds/spark/bdg-sequila/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala:103:23: not found: value Path [error] val bamPath = Path(resolvedPath) [error] ^ [error] /development/projects/05_ds/spark/bdg-sequila/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala:106:12: value loadReads is not a member of org.apache.spark.SparkContext [error] possible cause: maybe a semicolon is missing before `value loadReads'? [error] .loadReads(bamPath) [error] ^ [error] /development/projects/05_ds/spark/bdg-sequila/src/main/scala/org/biodatageeks/sequila/datasources/VCF/VCFRelation.scala:3:11: object projectglow is not a member of package io [error] import io.projectglow.Glow [error] ^ [error] /development/projects/05_ds/spark/bdg-sequila/src/main/scala/org/biodatageeks/sequila/datasources/VCF/VCFRelation.scala:35:7: not found: value Glow [error] Glow.transform(m.toLowerCase(), inputDf, Map("reference_genome_path" -> ref_genome_path.get)) [error] ^ [error] 6 errors found See fix for `AliasViewChild` as per apache/spark#22713
- Loading branch information