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Fix broken link to available data scripts #945

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merged 1 commit into from
Feb 10, 2023
Merged

Fix broken link to available data scripts #945

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36 changes: 19 additions & 17 deletions layouts/datasets/single.html
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Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,8 @@ <h4>Data available from research groups in Sweden</h4>
began to use a script to query the <a href="https://europepmc.org">Europe PMC database</a> (making use of their API)
in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH
involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or
code. <a href="https://github.com/ScilifelabDataCentre/covid-portal-scripts/blob/main/pmc_pub_seeker.py">The code
used for the query</a> is written in Python and, as with all of our code, it is openly available in GitHub. We
code. <a href="https://github.com/ScilifelabDataCentre/covid-portal-scripts/tree/main/Available_data">The code
used for the query</a> is written in Python and, as with all of our code, it is openly available in GitHub. We
welcome others to reuse it and to repurpose it for other pathogens.</p>
<p>The lists of available data may not be exhaustive as the script used to generate it does not search for every
possible database/repository. If you find that a dataset is missing, or that the information related to it is
Expand All @@ -26,19 +26,19 @@ <h4>Data available from research groups in Sweden</h4>
{{ $current_datatype := .Title }}
{{ $ds_to_display := slice }}
{{ range $index, $item := $all_data }}
{{ if eq $current_datatype "All data types"}}
{{ $ds_to_display = $ds_to_display | append $item }}
{{ else }}
{{ $add := false }}
{{ range .available_items }}
{{ if in .data_type $current_datatype }}
{{ $add = true }}
{{ end }}
{{ end }}
{{ if $add }}
{{ $ds_to_display = $ds_to_display | append $item }}
{{ end }}
{{ end }}
{{ if eq $current_datatype "All data types"}}
{{ $ds_to_display = $ds_to_display | append $item }}
{{ else }}
{{ $add := false }}
{{ range .available_items }}
{{ if in .data_type $current_datatype }}
{{ $add = true }}
{{ end }}
{{ end }}
{{ if $add }}
{{ $ds_to_display = $ds_to_display | append $item }}
{{ end }}
{{ end }}
{{ end }}

<div class="container">
Expand Down Expand Up @@ -168,7 +168,9 @@ <h5>Data types</h5>
});
</script>

<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.13.1/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.13.1/js/dataTables.bootstrap5.min.js"></script>
<script type="text/javascript" charset="utf8"
src="https://cdn.datatables.net/1.13.1/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" charset="utf8"
src="https://cdn.datatables.net/1.13.1/js/dataTables.bootstrap5.min.js"></script>

{{ end }}