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Add new national portals #1195

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Add new national portals #1195

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Add new national portals
senthil10 Sep 26, 2024
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LianeHughes Sep 27, 2024
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26 changes: 13 additions & 13 deletions .github/sitemap.xml
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<?xml version="1.0" encoding="UTF-8"?>
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<url>
<loc>https://www.pathogens.se/</loc>
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<url>
<loc>https://www.pathogens.se/partners/</loc>
<loc>https://www.pathogens.se/other_national_portals/</loc>
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<loc>https://www.pathogens.se/wastewater/map_orebro.pdf</loc>
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2 changes: 1 addition & 1 deletion content/english/about/_index.md
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#### History of the Portal

The Swedish Pathogens Portal was originally launched as the 'Swedish COVID-19 Data Portal' in June 2020 on assignment and with funding from the Swedish Research Council a.k.a. Vetenskapsrådet (more details [here](https://www.vr.se/english/just-now/news/news-archive/2020-06-03-new-national-portal-makes-research-data-on-covid-19-accessible.html)). The Portal was actually the first national node of the [European COVID-19 Data Platform](https://covid19dataportal.eu/), which was initiated and funded by the European Commission (more details [here](https://www.embl.org/news/science/embl-ebi-launches-covid-19-data-portal/)) and you can find an overview of other national nodes [here](/partners/). The Portal focused on SARS-CoV-2 and COVID-19 research data exclusively until the end of 2021. We released a [news item](/updates/first_year/) summarising our activities in 2021.
The Swedish Pathogens Portal was originally launched as the 'Swedish COVID-19 Data Portal' in June 2020 on assignment and with funding from the Swedish Research Council a.k.a. Vetenskapsrådet (more details [here](https://www.vr.se/english/just-now/news/news-archive/2020-06-03-new-national-portal-makes-research-data-on-covid-19-accessible.html)). The Portal was actually the first national node of the [European COVID-19 Data Platform](https://covid19dataportal.eu/), which was initiated and funded by the European Commission (more details [here](https://www.embl.org/news/science/embl-ebi-launches-covid-19-data-portal/)) and you can find an overview of other national nodes [here](/other_national_portals/). The Portal focused on SARS-CoV-2 and COVID-19 research data exclusively until the end of 2021. We released a [news item](/updates/first_year/) summarising our activities in 2021.

From 2022, the Portal expanded to cover other research relevant to pandemic preparedness and became a part of the [SciLifeLab Pandemic Laboratory Preparedness programme](https://www.scilifelab.se/pandemic-response/pandemic-laboratory-preparedness/). The SciLifeLab Pandemic Laboratory Preparedness Programme is funded by the earmarked governmental funding to SciLifeLab ([Research proposition Prop. 202/21:60](https://www.regeringen.se/rattsliga-dokument/proposition/2020/12/forskning-frihet-framtid--kunskap-och-innovation-for-sverige/)).

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</div>
<div class="col-12 col-md-8 col-lg-9">
<h6>Pathogens Portal</h6>
<p>The <a href="https://www.pathogensportal.org/" target="_blank">Pathogens Portal</a>, maintained by the European Molecular Biology Laboratory's European Bioinformatics Institute (<a href="https://www.ebi.ac.uk/" target="_blank">EMBL-EBI</a>) and partners, was launched in July 2023. The Pathogens Portal is a resource for e.g. researchers, clinicians, and policymakers. Its aim is to facilitate access to the latest and most comprehensive datasets on pathogens. The COVID-19 pandemic put a spotlight on the importance of data sharing and for focused access to relevant datasets. Therefore, the Pathogens Portal was developed as a centralised platform for data sharing and accessing data on key pathogens. These pathogens include both pathogens affecting humans and animals, and on vectors and hosts. Bringing together data from a number of sources, and linking data contributes to a better understand Pathogen ́s Biology. Funded through five European Union projects funded under the Horizon 2020 and Horizon Europe programmes: <a href="https://recodid.eu/" target="_blank">RECODID</a>, <a href="https://www.veo-europe.eu/" target="_blank">VEO</a>, <a href="https://www.eosc-life.eu/" target="_blank">EOSC-Life</a>, <a href="https://elixir-europe.org/about-us/how-funded/eu-projects/converge" target="_blank">CONVERGE</a> and <a href="https://by-covid.org/" target="_blank">BY-COVID</a>. Moving forward, national nodes of the Pathogens Portal will be added, the Swedish Pathogens Portal is the first to launch in Sept 2023. </p>
<p>The <a href="https://www.pathogensportal.org/" target="_blank">Pathogens Portal</a>, maintained by the European Molecular Biology Laboratory's European Bioinformatics Institute (<a href="https://www.ebi.ac.uk/" target="_blank">EMBL-EBI</a>) and partners, was launched in July 2023. The Pathogens Portal is a resource for e.g. researchers, clinicians, and policymakers. Its aim is to facilitate access to the latest and most comprehensive datasets on pathogens. The COVID-19 pandemic put a spotlight on the importance of data sharing and for focused access to relevant datasets. Therefore, the Pathogens Portal was developed as a centralised platform for data sharing and accessing data on key pathogens. These pathogens include both pathogens affecting humans and animals, and on vectors and hosts. Bringing together data from a number of sources, and linking data contributes to a better understand Pathogen ́s Biology. Funded through five European Union projects funded under the Horizon 2020 and Horizon Europe programmes: <a href="https://recodid.eu/" target="_blank">RECODID</a>, <a href="https://www.veo-europe.eu/" target="_blank">VEO</a>, <a href="https://www.eosc-life.eu/" target="_blank">EOSC-Life</a>, <a href="https://elixir-europe.org/about-us/how-funded/eu-projects/converge" target="_blank">CONVERGE</a> and <a href="https://by-covid.org/" target="_blank">BY-COVID</a>. Moving forward, national nodes of the Pathogens Portal will be added, the Swedish Pathogens Portal is the first to launch in Sept 2023. An overview of other national nodes <a href="/other_national_portals/">can be found here</a>.</p>
</div>
</div>
<hr class="faded" />
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</div>
<div class="col-12 col-md-8 col-lg-9">
<h6>European COVID-19 Data Platform</h6>
<p>The Swedish Pathogens Portal was originally launched as the ‘Swedish COVID-19 Data Portal’ and it was a national node of the <a href="https://www.covid19dataportal.org/" target="_blank">European COVID-19 Data Platform</a>. The European COVID-19 Data Platform is operated by the <a href="https://ebi.ac.uk" target="_blank">European Bioinformatics Institute</a> (a part of the <a href="https://www.embl.org/" target="_blank">European Molecular Biology Laboratory</a> (EMBL-EBI)), together with the European Commission, and other research partners, such as ELIXIR. An overview of other national nodes <a href="/partners/">can be found here</a>.</p>
<p>The Swedish Pathogens Portal was originally launched as the ‘Swedish COVID-19 Data Portal’ and it was a national node of the <a href="https://www.covid19dataportal.org/" target="_blank">European COVID-19 Data Platform</a>. The European COVID-19 Data Platform is operated by the <a href="https://ebi.ac.uk" target="_blank">European Bioinformatics Institute</a> (a part of the <a href="https://www.embl.org/" target="_blank">European Molecular Biology Laboratory</a> (EMBL-EBI)), together with the European Commission, and other research partners, such as ELIXIR. An overview of other national nodes <a href="/other_national_portals/">can be found here</a>.</p>
<p>The European COVID-19 Data Platform aims to facilitate data sharing and analysis in order to accelerate coronavirus research. It enables researchers to upload, access and analyse reference data and specialist datasets related to COVID-19. It is synchronised with COVID-19-related data and scientific literature held in EMBL-EBI's data resources, including ENA, UniProt, PDBe, EMDB, Expression Atlas and Europe PMC. The data continues to grow in diversity and volume, but include sequences, structures, expression data, compound screens, biochemistries and scientific publications.</p>
</div>
</div>
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---
title: Other National Portals
title: Other national portals
toc: false
menu:
footer_about:
name: Other National Portals
name: Other national portals
weight: 20
---

### National COVID-19 Data Portals

The Swedish Pathogens Portal originated as the 'Swedish COVID-19 Data Portal'. It was the first national node of the [European COVID-19 Data Platform](https://covid19dataportal.org/); a Europe-wide platform allowing researchers to upload, access, and analyse COVID-19 related datasets. The [European COVID-19 Data Platform](https://covid19dataportal.org/) was launched in the spring of 2020 when the European Commission [took the initiative to develop a European data sharing platform for COVID-19 research efforts](https://www.embl.org/news/science/embl-ebi-launches-covid-19-data-portal/). It is operated by the European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI) and [partners](https://www.covid19dataportal.org/partners).

Besides [Sweden](https://www.pathogens.se), a number of other countries also launched national portals, many of which used [our source code](https://github.com/ScilifelabDataCentre/pathogens-portal) to get started! Below is a list of the other national COVID-19 data portals:
Multiple other countries used the Swedish portal as a basis for their own national portals, with many making use of [our source code](https://github.com/ScilifelabDataCentre/pathogens-portal) to get started! Below is a list of national COVID-19 Data Portals established:

- [COVID-19 Data Portal Estonia](https://covid19dataportal.ee)
- [COVID-19 Data Portal Greece](https://www.covid19dataportal.gr)
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Norway and Turkey ([see Turkey's archived portal](https://www.loc.gov/item/lcwaN0030712/)) also had national COVID-19 data portals throughout the COVID-19 pandemic.

### National Pathogens Portals

In July 2023, the European Molecular Biology Laboratory's European Bioinformatics Institute ([EMBL-EBI](https://www.ebi.ac.uk/)) launched a new version of the [Pathogens Portal](https://www.pathogensportal.org/). This reflects global move towards general pandemic preparedness, and away from just COVID-19 specifically. The Pathogens Portal holds data and information about multiple pathogens and pandemic preparedness in general.

In August 2023, we transitioned the Swedish COVID-19 Data Portal into the first national node of the Pathogens Portal ([read our news](https://www.pathogens.se/updates/pathogens_portal/)). It is now known as the Swedish Pathogens Portal. In time, other national nodes of will come online, and will be listed below.
In August 2023, we transitioned the Swedish COVID-19 Data Portal into the first national node of the Pathogens Portal ([read our news](https://www.pathogens.se/updates/pathogens_portal/)). It is now known as the Swedish Pathogens Portal. Other countries have now followed suit, again using the Swedish portal as a basis for their own national portals (see e.g. [news on the launch of the Swiss and Norwegian Portals](https://www.pathogensportal.org/news/swiss-and-norwegian-national-pathogens-portals-launched?nid=173)).

- [Pathogens Portal Switzerland](https://pathogensportal.ch/)
- [Pathogens Portal Norway](https://pathogens.no/)
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#### Portalens historia

Pathogens Portal Sverige lanserades ursprungligen som den svenska dataportalen för COVID-19 i juni 2020 på [uppdrag av](https://www.vr.se/english/just-now/news/news-archive/2020-06-03-new-national-portal-makes-research-data-on-covid-19-accessible.html) och med finansiering från [Vetenskapsrådet](https://www.vr.se). Den svenska Covid-19 dataportalen blev den första nationella noden i ett nätverk av Covid-19 dataportaler kopplade till den [europeiska Covid-19 dataplattformen](https://covid19dataportal.org). Den europeiska Covid-19 dataplattformen i sin tur har initierats och finansieras av Europeiska kommissionen (för mer information och en översikt över andra Covid-19 dataportalen som ingår i nätverket se [här](https://covid19dataportal.se/partners/). För en sammanfattning av vad som skett under Portalens första år se denna datanyhet [här](https://covid19dataportal.se/updates/first_year/). Portalen fokuserade uteslutande på SARS-CoV-2 och Covid-19 forskningsdata fram till slutet av 2021.
Pathogens Portal Sverige lanserades ursprungligen som den svenska dataportalen för COVID-19 i juni 2020 på [uppdrag av](https://www.vr.se/english/just-now/news/news-archive/2020-06-03-new-national-portal-makes-research-data-on-covid-19-accessible.html) och med finansiering från [Vetenskapsrådet](https://www.vr.se). Den svenska Covid-19 dataportalen blev den första nationella noden i ett nätverk av Covid-19 dataportaler kopplade till den [europeiska Covid-19 dataplattformen](https://covid19dataportal.org). Den europeiska Covid-19 dataplattformen i sin tur har initierats och finansieras av Europeiska kommissionen (för mer information och en översikt över andra nationella noder finns som ingår i nätverket se [här](/sv/other_national_portals/). För en sammanfattning av vad som skett under Portalens första år se denna datanyhet [här](https://covid19dataportal.se/updates/first_year/). Portalen fokuserade uteslutande på SARS-CoV-2 och Covid-19 forskningsdata fram till slutet av 2021.

Från 2022 har Portalen utvidgats till att även inkluderar forskningsämnen med relevans för pandemisk beredskap och är en del av SciLifeLabs forskningsprogram för pandemisk laboratorieberedskap. SciLifeLabs forskningsprogram för pandemisk laboratorieberedskap finansieras av ett regeringsuppdrag till SciLifeLab [(Prop. 202/21:60)](https://www.regeringen.se/rattsliga-dokument/proposition/2020/12/forskning-frihet-framtid--kunskap-och-innovation-for-sverige/).

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