Update updating/historic dashboards and add alerts

content/english/dashboards/crush_covid.md

@@ -14,6 +14,10 @@ dashboards_topics: [COVID-19, Infectious diseases]
 data_status: "historic" # or "updating"
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 <div class="containter">
 <div class="row mr-2 mt-2">
 <div class="col-lg-9">

content/english/dashboards/multidisease_serology.md

@@ -10,14 +10,9 @@ menu:
 dashboards_topics:
   [COVID-19, Infectious diseases, Influenza, Enteric viruses, Mpox]
 toc: true
-data_status: "historic" # or "updating"
+data_status: "updating" # or "historic"
 ---
 
-
-<div class="alert alert-info bi bi-exclamation-triangle-fill">
-  <span>The data on this page is no longer updated but is kept for historical reference.</span>
-</div>
-
 ## Introduction
 
 The COVID-19 pandemic highlighted the importance of serological surveillance in tracking viral transmission dynamics, understanding immune responses, guiding vaccination strategies, and assisting in decisions related to public health. High-throughput serological assays for SARS-CoV-2 were developed very early in the pandemic at KTH and SciLifeLab to enable surveillance of populations globally. For information about work done with SARS-CoV-2 during the pandemic, see the [historical background section](#historical-background).

content/english/dashboards/npc-statistics.md

@@ -15,7 +15,7 @@ dashboards_topics: [COVID-19, Infectious diseases]
 data_status: "historic" # or "updating"
 ---
 
-<div class="alert alert-info small">
+<div class="alert alert-info">
   <p><i class="bi bi-exclamation-triangle-fill"></i>The National Pandemic Centre (NPC) at Karolinska Institute ceased operations of high throughput PCR diagnostics on 2020-12-21.</p>
   <p><span class="font-weight-bold">The data presented here is no longer updated</span> but is kept for historical reference.</p>
   <a class="dark-blue" href="https://nyheter.ki.se/covid-19-tester-ki-atergar-till-ordinarie-laboratorieverksamhet-men-har-fortsatt-beredskap">KI Press Release</a>

content/english/dashboards/post_covid.md

@@ -14,6 +14,10 @@ dashboards_topics: [COVID-19, Infectious diseases]
 data_status: "historic" # or "updating"
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 Since the beginning of 2020, the COVID-19 pandemic has challenged healthcare and dramatically changed daily life for people worldwide. The severity of symptoms experienced by patients during the acute infection phase of COVID-19 disease varies between individuals from mild to severe. After this phase, there are usually no indications that the disease will have any long-term effects on their health, regardless of the severity of symptoms experienced during the acute infection phase. However, some patients continue to exhibit symptoms for prolonged periods after the acute phase. The symptoms experienced by such patients are broad, but can include, for example, deep fatigue, joint pain, ‘brain fog’ (difficulty concentrating on certain tasks for longer periods of time), and heart palpitations ([Brodin, 2021](https://doi.org/10.1038/s41591-020-01202-8), [Marx, 2021](https://doi.org/10.1038/s41592-021-01145-z)). These symptoms can have a significant impact on the patients' quality of life.
 
 Most studies that have explored what causes some patients to experience prolonged symptoms have been descriptive. However, several recent studies have explored potential causes in detail. For example, [Važgėlienė _et al._ (2022)](https://www.mdpi.com/2077-0383/11/21/6278) investigated potential links between prolonged symptoms after COVID-19 infection and other types of chronic disease or daily medication. They found an association between the taking of daily medication and the development of prolonged symptoms after COVID-19 infection. Other studies have found that multiple other factors, including being female, advanced age, and poor general health, are associated with an increased risk of experiencing prolonged symptoms after a COVID-19 infection ([Sudre _et al._, 2021](https://www.nature.com/articles/s41591-021-01292-y)).

content/english/dashboards/serology-statistics.md

@@ -15,7 +15,7 @@ aliases:
   - /data_types/health_data/serology-statistics/
 dashboards_topics: [COVID-19, Infectious diseases]
 plotly: true
-data_status: "historic" # or "updating"
+data_status: "updating" # or "historic"
 ---
 
 <div class="alert alert-info">
@@ -29,7 +29,7 @@ Serology tests involve testing bodily fluids for the presence of antibodies or o
 - **Negative tests**: Serology tests indicating the _absence_ of immunoglobulin G (IgG) antibodies targeting SARS-CoV-2 proteins.
 - **R&D tests**: All of the remaining serum, plasma, and saliva samples that were completed to test the levels IgG, IgM, or IgA antibodies targeting SARS-CoV-2 proteins. This includes all of the positive and negative controls, all replicated and re-ran samples and assays, all samples analysed during the continuous development and optimisation of the tests, technically failed samples, and all research associated projects.
 
-<div class="alert alert-info">Data last updated: {{% serology_date_modified %}} (no longer updating)</div>
+<div class="alert alert-info">Data last updated: {{% serology_date_modified %}}</div>
 
 ## Weekly serology tests
 

content/english/dashboards/symptom_study_sweden.md

@@ -15,6 +15,10 @@ dashboards_topics: [COVID-19, Infectious diseases]
 data_status: "historic" # or "updating"
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 **COVID Symptom Study Sweden** is a national research initiative for large-scale data collection and analysis of symptoms, exposure, and risk factors associated with the COVID-19 infection. The project is run by Lund University and Uppsala University in collaboration with King’s College London and Zoe Global Ltd. COVID Symptom Study Sweden is led by prof. Paul Franks and prof. Maria Gomez (Lund University) as well as prof. Tove Fall (Uppsala University).
 
 [COVID Symptom Study Sweden](https://www.covid19app.lu.se/) uses a non-commercial app for data collection from volunteer study participants. Anyone 18 years or older living in Sweden can participate in the study. As of March 2021, COVID Symptom Study Sweden has over 206,000 participants and accumulated over 12 million data points.

content/english/dashboards/wastewater/covid_quantification/covid_quant_GU.md

@@ -10,11 +10,15 @@ aliases:
 </div>
 <br>
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 ## Introduction
 
 This project is led by Professor Helene Norder (University of Gothenburg, GU), and supported by co-workers from the University of Gothenburg and Sahlgrenska University Hospital (Hao Wang, Marianela Patzi Churqui, Timur Tunovic, Fredy Saguti, and Kristina Nyström). The wastewater sample collections were performed by Lucica Enache at Ryaverket, Gryaab AB, Gothenburg.
 
-The group began collecting samples on 10th February (week 7) 2020. They updated the methods related to analysing the samples during 2023, and began to use this updated method on 15th May (week 20) 2023. This page concerns only the data collected using their updated method. The associated data and visualisation are **updated approximately weekly**. Corresponding information about data collected using an earlier method is available in the ['Historic SARS-CoV-2 data from Gothenburg' page](/dashboards/wastewater/covid_quantification/historic_covid_gu/).
+The group began collecting samples on 10th February (week 7) 2020. They updated the methods related to analysing the samples during 2023, and began to use this updated method on 15th May (week 20) 2023. This page concerns only the data collected using their updated method. The associated data and visualisation are **no longer being updated**. Corresponding information about data collected using an earlier method is available in the ['Historic SARS-CoV-2 data from Gothenburg' page](/dashboards/wastewater/covid_quantification/historic_covid_gu/).
 
 The SARS-CoV-2 virus monitoring by the Norder group was done alongside their ongoing monitoring of enteric viruses in wastewater, the data for which are [also shared on this portal](/dashboards/wastewater/enteric_quantification/).
 
@@ -24,7 +28,7 @@ Influent wastewater samples were collected from Ryaverket wastewater treatment p
 
 ## Visualisation
 
-<div class="alert alert-info">Last updated: <span id="last_modified_gu"></span></div>
+<div class="alert alert-info">Last updated: <span id="last_modified_gu"></span> (no longer updating)</div>
 
 <div class="d-md-none alert alert-info">
   Rotating your phone may improve graph layout

content/english/dashboards/wastewater/covid_quantification/covid_quant_KTH.md

@@ -5,18 +5,18 @@ aliases:
   - /dashboards/wastewater/covid_quant_kth/
 ---
 
-<div class="alert alert-info">As of June 2023, the SARS-CoV-2 data will no longer be updated by SEEC-KTH. Data from after June 2023 is <a class="dark-blue" href="/dashboards/wastewater/covid_quantification/covid_quant_slu/">available from other research groups.</a></div>
-
 <div class="mt-3">
   <a href="/dashboards/wastewater/covid_quantification/"><i class="bi bi-arrow-left-circle-fill"></i> Go back to SARS-CoV-2 quantification within the wastewater epidemiology dashboard</a>
 </div>
 <br>
 
+<div class="alert alert-info">As of June 2023, the SARS-CoV-2 data will no longer be updated by SEEC-KTH. Data from after June 2023 is <a class="dark-blue" href="/dashboards/wastewater/covid_quantification/covid_quant_slu/">available from other research groups.</a></div>
+
 ## Introduction
 
 This project is led by associate professor Zeynep Cetecioglu Gurol and supported by Mariel Perez-Zabaleta and Isaac Owusu-Agyeman at KTH Royal Institute of Technology (KTH). Bioinformatics analyses of wastewater samples are held by assistant professor Luisa Hugerth (Uppsala University). This group of researchers are known as SEEC-KTH. The project was established as a collaboration between the [SciLifeLab COVID-19 National Research Program](https://www.scilifelab.se/covid-19), and the [SEED](https://www.kth.se/en/seed) and [Chemical Engineering](https://www.kth.se/ket/chemical-engineering-1.784196) departments at KTH. The project is now funded as part of the SciLifeLab Pandemic Laboratory Preparedness (PLP) Program. More information about the PLP program can be found in our [resources section](/resources/). SEEC-KTH is now part of the [Department of Industrial Biotechnology](https://www.kth.se/dib/department-of-industrial-biotechnology-1.783103) at KTH.
 
-The data and visualisations on this page are usually updated weekly, typically on Fridays. Data and information about the group on this dashboard are updated frequently, so please check back regularly to stay up to date.
+The data and visualisations on this page are **no longer being updated**.
 
 ## Wastewater collection sites
 
@@ -34,7 +34,7 @@ Please also note that although the same methods are used for all cities shown on
 
 ### Stockholm
 
-<div class="alert alert-info">Last updated: <span id="last_modified_stockholm"></span></div>
+<div class="alert alert-info">Last updated: <span id="last_modified_stockholm"></span> (no longer updating)</div>
 
 <button type="button" class="btn btn-sm btn-outline-secondary mb-2" data-bs-toggle="modal" data-bs-target="#interactiveFeaturesModal">
   How to use the interactive features of the plot
@@ -77,7 +77,7 @@ Please also note that although the same methods are used for all cities shown on
 
 ### Malmö
 
-<div class="alert alert-info">Last updated: <span id="last_modified_malmo"></span></div>
+<div class="alert alert-info">Last updated: <span id="last_modified_malmo"></span> (no longer updating)</div>
 
 <div class="d-md-none alert alert-info">
   Rotating your phone may improve graph layout

content/english/dashboards/wastewater/covid_quantification/historic_covid_gu.md

@@ -5,6 +5,10 @@ aliases:
   - /dashboards/wastewater/historic_covid_gu/
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 This page shows historic wastewater epidemiology data related to SARS-CoV-2 that was collected in Gothenburg, Sweden. The data was collected by the group led by Professor Helene Norder (University of Gothenburg, GU), supported by co-workers from the University of Gothenburg and Sahlgrenska University Hospital (Hao Wang, Marianela Patzi Churqui, Timur Tunovic, Fredy Saguti, and Kristina Nyström). The data shown on this page was collected between week 7 of 2020, and week 43 of 2023 (i.e. between 10th February 2020 and 23rd October 2023). The group started to use a new method from week 20 of 2023. Data produced using this new method continues to be updated approximately weekly, and is available on the ['Amount of SARS-CoV-2 in wastewater (GU)' page](/dashboards/wastewater/covid_quantification/covid_quant_gu/).
 
 ## Wastewater collection sites
@@ -13,7 +17,7 @@ Influent wastewater samples were collected from Ryaverket wastewater treatment p
 
 ### Visualisation
 
-<div class="alert alert-info">Last updated: 2023-11-17</div>
+<div class="alert alert-info">Last updated: 2023-11-17 (no longer updating)</div>
 
 _The blue block on the graph indicates the period where sample collection was not completed (week 45 2022 - week 2 2023)._
 

content/english/dashboards/wastewater/enteric_quantification/_index.md

@@ -10,6 +10,10 @@ aliases:
   - /dashboards/wastewater/enteric_quant_gu/
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 ## Introduction
 
 Enteric viruses are a large group of viruses including, for example, calicivirus (including norovirus and sapovirus), adenoviruses, and astroviruses. They are transmitted via faecal-oral route, and cause enteric disease (i.e. diseases with symptoms such as nausea, diarrhea, and vomiting).
@@ -22,15 +26,15 @@ This page details the [latest method used in monitoring](#methods), as well as [
 
 The enteric virus monitoring by the Norder group was done alongside their ongoing monitoring of SARS-CoV-2 in wastewater, the data for which are [also shared on this portal](/dashboards/wastewater/covid_quantification/covid_quant_gu/).
 
-The data and visualisations on this page will be updated **approximately weekly**.
+The data and visualisations on this page is **no longer being updated**.
 
 ## Wastewater collection sites
 
 Influent wastewater samples were collected from Ryaverket wastewater treatment plant (WWTP) in Gothenburg by Lucica Enache at Ryaverket, Gryaab AB, Gothenburg (see the methods section below for details). The Ryaverket treatment plant receives wastewater from all of the households in Gothenburg, which includes 790,000 inhabitants, as well as from industry in the area. Wastewater is also received from industry and residents in surrounding municipalities, including Ale, Härryda, Kungälv, Lerum, Mölndal, and Partille, and also from storm and snowmelt water from older parts of Gothenburg.
 
 ## Visualisations
 
-<div class="alert alert-info">Last updated: <span id="last_modified_enteric"></span></div>
+<div class="alert alert-info">Last updated: <span id="last_modified_enteric"></span> (no longer updating)</div>
 
 Please see [the section with summary information about the viruses](#basic-virus-information) for more information on each of the viruses for which data is being collected.
 

content/english/dashboards/wastewater/enteric_quantification/historic_enteric_gu.md

@@ -5,6 +5,10 @@ aliases:
   - /dashboards/wastewater/historic_enteric_GU/
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 This page shows historic wastewater epidemiology data for enteric viruses. The data was collected in Gothenburg, Sweden by the group led by Professor Helene Norder (University of Gothenburg, GU). The work was supported by co-workers from the University of Gothenburg and Sahlgrenska University Hospital (Hao Wang, Marianela Patzi Churqui, Timur Tunovic, Fredy Saguti, and Kristina Nyström), and Lucica Enache at Ryaverket, Gryaab AB, Gothenburg. The data shown on this page was collected between week 2 and week 43 of 2023 (i.e. between 9th January and 23rd October 2023). The group started to use a new method from week 20 of 2023 (15th May). Data produced using this new method continues to be updated approximately weekly, and is available on the ['Amount of enteric virus in wastewater (GU)' page](../).
 
 ## Introduction
@@ -23,7 +27,7 @@ Influent wastewater samples were collected from Ryaverket wastewater treatment p
 
 ## Visualisations
 
-<div class="alert alert-info">Last updated: 2023-11-17</div>
+<div class="alert alert-info">Last updated: 2023-11-17 (no longer updating)</div>
 
 Please see [the section with summary information about the viruses](#basic-virus-information) for more information on each of the viruses for which data was collected.
 

content/svenska/dashboards/RECOVAC.md

@@ -8,6 +8,7 @@ menu:
   dashboard_menu:
     identifier: recovac
     name: Registerbaserade vaccindata (RECOVAC)
+data_status: "updating" # or "historic"
 ---
 
 <div class="alert alert-info">

content/svenska/dashboards/covid_publications.md

@@ -10,6 +10,8 @@ menu:
     name: Översikt över COVID-19 publikationer
 aliases:
   - /projects/dashboard/
+dashboards_topics: [COVID-19, Infectious diseases]
+data_status: "updating" # or "historic"
 ---
 
 <div class="alert alert-info">

content/svenska/dashboards/crush_covid.md

@@ -10,9 +10,14 @@ menu:
   dashboard_menu:
     identifier: crush_covid
     name: CRUSH Covid Uppsala (Partnerprojekt)
+dashboards_topics: [COVID-19, Infectious diseases]
 data_status: "historic" # or "updating"
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> De data som presenteras här uppdateras inte längre utan bevaras för historisk referens.</span>
+</div>
+
 <div class="containter">
 <div class="row mr-2 mt-2">
 <div class="col-lg-9">

content/svenska/dashboards/npc-statistics.md

@@ -10,10 +10,11 @@ menu:
   dashboard_menu:
     identifier: npc-statistics
     name: "SARS-CoV-2-tester vid National Pandemic Centre"
+dashboards_topics: [COVID-19, Infectious diseases]
 data_status: "historic" # or "updating"
 ---
 
-<div class="alert alert-info small">
+<div class="alert alert-info">
   <p><i class="bi bi-exclamation-triangle-fill"></i>Nationellt Pandemiskt center på Karolinska Institutet upphörde med högkapacitets PCR diagnostik 2020-12-21.</p>
   <p><span class="font-weight-bold">Den data som visas här har slutat uppdateras</span> och utgör endast historisk dokumentation.</p>
   <a href="https://nyheter.ki.se/covid-19-tester-ki-atergar-till-ordinarie-laboratorieverksamhet-men-har-fortsatt-beredskap">KIs pressmeddelande</a>