DDS-1680: AddFailedFiles endpoint to insert files if failed

[valyo]

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1. Description / Summary

On data upload, it can happen that some files uploaded to S3 are not added to the DB (due to failed API request or DB lock). In such cases, DDS CLI creates a log file containing the failed files, which is supposed to be passed to the update-uploaded-file flask command for adding the files in the DB. This change creates an endpoint for updating the failed files upon a request from DDS CLI.

Tested manually in the following way:

• In data_putter.py, def put, line 376 (in the try-except block), I added:

            if "requirements-test" in file_local:
                raise FileNotFoundError

• In data_putter.py, def add_file_db, line 431 (in the try-except block), I added:

            if "test_account_manager.py" in str(file_info["name"]):
                raise dds_cli.exceptions.DDSCLIException(message="Failed to add file to db")

• Then I ran dds data put -p [project] -s tests
  • Without --overwrite
  • With --overwrite

2. Jira task / GitHub issue

DDS-1529

3. Type of change

What type of change(s) does the PR contain?

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• New feature
  • Breaking: Why / How? Add info here.
  • Non-breaking Works with #656
• Database change: Remember the to include a new migration version, or explain here why it's not needed.
• Bug fix
• Security Alert fix
• Documentation
• Workflow
• Tests only

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[codecov]

Codecov Report

Merging #1472 (9f67d66) into dev (f32c284) will increase coverage by 0.85%.
The diff coverage is 100.00%.

@@            Coverage Diff             @@
##              dev    #1472      +/-   ##
==========================================
+ Coverage   90.32%   91.17%   +0.85%     
==========================================
  Files          29       29              
  Lines        4484     4542      +58     
==========================================
+ Hits         4050     4141      +91     
+ Misses        434      401      -33     

Files	Coverage Δ
dds_web/api/__init__.py	100.00% <100.00%> (ø)
dds_web/api/files.py	83.75% <100.00%> (+0.47%)	⬆️
dds_web/commands.py	85.62% <100.00%> (+5.35%)	⬆️
dds_web/utils.py	94.65% <100.00%> (+2.04%)	⬆️

[rv0lt]

The only comment I see is the Garbage collector thing :)