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Fix unit label handling #3902

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merged 7 commits into from
Oct 7, 2020
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znicholls
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@znicholls znicholls commented Oct 3, 2020

🚀 Pull Request

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I just pulled out v3.0.0rc0 to see if it would work with my package. For the most part, everything looks great (massive thanks for all your efforts!). I spotted one (what I think is a) bug. If the units symbol is used, then I don't think a check should be done for is_time_reference afterwards as that check is already in _use_symbol.

This requires SciTools/test-iris-imagehash#36.

At the same time, I noticed that idiff.py has a small bug. I had a hyphen in my path other than the one in result_image_comparison/result-iris so the key appeared in the wrong place. I've fixed that here too (should there be a whatsnew entry for that too?).

@znicholls znicholls marked this pull request as ready for review October 3, 2020 08:19
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@trexfeathers are you the right person to ask to check this?

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@znicholls taking a look now

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Thanks for the PR @znicholls!

Please could you address my comments below? I'll hold off SciTools/test-iris-imagehash#36 until then. Thanks

lib/iris/quickplot.py Show resolved Hide resolved
lib/iris/tests/idiff.py Outdated Show resolved Hide resolved
lib/iris/tests/test_quickplot.py Show resolved Hide resolved
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@bjlittle bjlittle added this to the v3.0.0 milestone Oct 6, 2020
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bjlittle commented Oct 6, 2020

@znicholls Awesome. Thanks for the PR and taking the time to checkout 3.0.0rc0 and feedback so swifty... much appreciated 👍

Would be be able to target the v3.0.x branch instead of master please, then we can bank your contribution in the 3.0.0 release.

Also, if it helps, see changing the base branch of a pull request.

Thanks.

@znicholls znicholls changed the base branch from master to v3.0.x October 6, 2020 01:59
@znicholls znicholls force-pushed the units-labels branch 2 times, most recently from cd370f9 to 6d07d8d Compare October 6, 2020 02:08
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Thanks for the PR and taking the time to checkout 3.0.0rc0 and feedback so swifty... much appreciated

Thanks for all your efforts (especially contributing docs, they're amazing!)

Would be be able to target the v3.0.x branch instead of master please, then we can bank your contribution in the 3.0.0 release.

Done, not sure if my whatsnew additions are in the right place anymore though (wasn't sure whether to put them in the 3.0 doc given that has a label of 2 Oct...)

@trexfeathers trexfeathers self-assigned this Oct 6, 2020
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Thanks for the changes @znicholls; one more to make...

docs/iris/src/whatsnew/latest.rst Outdated Show resolved Hide resolved
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🎉 thanks for your persistence @znicholls

@trexfeathers trexfeathers merged commit 6d36021 into SciTools:v3.0.x Oct 7, 2020
tkknight added a commit that referenced this pull request Nov 25, 2020
* Add release highlights and pin rc version (#3898)

* Add release highlights and pin rc version

* review actions

* reorder release highlights (#3899)

Tweak release highlights

* Add whatsnew announcement (#3900)

* Fix spelling (#3903)

* Fix unit label handling (#3902)

* Add failing test of plotting

* Implement fix to pass test

* Update idiff to ignore irrelevant hyphens in path

* Update imagerepo (following docs)

* Update after review by @trexfeathers

* Add whatsnew entries

* Move whatsnew entries into correct file

* Release Docs Improvements (#3895)

* Minor phrasing change in 'Release candidate'.

* Before release deprecations.

* Whatsnew highlights section.

* Relax setup.py setup requirements (#3909)

* Updated CF saver version in User Guide and docstring (#3925)

* Updated CF saver version in User Guide and docstring

* Remove references to CF version of the loader in docstrings

* Added whatsnew

* Pin cftime<1.3.0

* Migrate to cirrus-ci (#3928)

* migrate from travis-ci to cirrus-ci

* added whatsnew entries

* ignore url for doc link check (#3929)

* whatsnew for coord default units (#3924)

* merge back v3.0.x branch

Co-authored-by: tkknight <[email protected]>
Co-authored-by: Zeb Nicholls <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: Jon Seddon <[email protected]>
Co-authored-by: Ruth Comer <[email protected]>
trexfeathers added a commit that referenced this pull request Jan 27, 2021
* Add release highlights and pin rc version (#3898)

* Add release highlights and pin rc version

* review actions

* reorder release highlights (#3899)

Tweak release highlights

* Add whatsnew announcement (#3900)

* Fix spelling (#3903)

* Fix unit label handling (#3902)

* Add failing test of plotting

* Implement fix to pass test

* Update idiff to ignore irrelevant hyphens in path

* Update imagerepo (following docs)

* Update after review by @trexfeathers

* Add whatsnew entries

* Move whatsnew entries into correct file

* Release Docs Improvements (#3895)

* Minor phrasing change in 'Release candidate'.

* Before release deprecations.

* Whatsnew highlights section.

* Relax setup.py setup requirements (#3909)

* Updated CF saver version in User Guide and docstring (#3925)

* Updated CF saver version in User Guide and docstring

* Remove references to CF version of the loader in docstrings

* Added whatsnew

* Pin cftime<1.3.0

* Migrate to cirrus-ci (#3928)

* migrate from travis-ci to cirrus-ci

* added whatsnew entries

* ignore url for doc link check (#3929)

* whatsnew for coord default units (#3924)

* Cube._summary_coord_extra: efficiency and bugfix (#3922)

* Add Documentation Title Case Capitalization (#3940)

* Use Title Case Capitalisation for Documentation

* add whatsnew enter

* CI requirements drop pip packages (#3939)

* requirements pip to conda

* use pip install over develop

* default PY_VER to python versions

* update links (#3942)

* update links

* added s to http

* Add support for 1-d weights in collapse. (#3943)

* Remove warning for convert_units on lazy data (#3951)

* drop stickler references in docs (#3953)

* drop stickler references in docs

* remove sticker from common links

* update docs for travis-ci to cirrus-ci (#3954)

* update docs for travis-ci to cirrus-ci

* add 'travis-ci' reference locally to whatsnew

* update whatsnew comment

* docs for nox (#3955)

* docs for nox

* add titles, notices and additional detail

* review actions

* Resolve test coverage (#3947)

* test coverage for __init__ and __call__

* test coverage for metadata resolve and coverage

* partial test coverage for metadata mapping

* python 3.6 workaround for deepcopy of mock.sentinel

* test coverage for Resolve._free_mapping

* test coverage for Resolve convenience methods

* add test stub for Resolve._metadata_mapping

* fix Test__tgt_cube_position

* test coverage for shape

* test coverage for _as_compatible_cubes

* test coverage for Resolve._metadata_mapping

* test coverage for Resolve._prepare_common_dim_payload

* test coverage for Resolve._prepare_common_aux_payload

* test coverage for Resolve._prepare_points_and_bounds

* test coverage for Resolve._create_prepared_item

* test coverage for Resolve._prepare_local_payload_dim

* test coverage for Resolve._prepare_local_payload_aux

* test coverage for Resolve._prepare_local_payload_scalar + docs URL skip

* test coverage for Resolve._prepare_local_payload

* test coverage for Resolve._metadata_prepare

* added docs URL linkcheck skip

* test coverage for Resolve._prepare_factory_payload

* test coverage for Resolve._get_prepared_item

* review actions

* test coverage for Resolve.cube

* pin v3.0.0 version and whatnew date (#3956)

* update github ci checks image (#3957)

Co-authored-by: tkknight <[email protected]>
Co-authored-by: Zeb Nicholls <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: Jon Seddon <[email protected]>
Co-authored-by: Ruth Comer <[email protected]>
Co-authored-by: Patrick Peglar <[email protected]>
trexfeathers added a commit that referenced this pull request Jan 28, 2021
* Add release highlights and pin rc version (#3898)

* Add release highlights and pin rc version

* review actions

* reorder release highlights (#3899)

Tweak release highlights

* Add whatsnew announcement (#3900)

* Fix spelling (#3903)

* Fix unit label handling (#3902)

* Add failing test of plotting

* Implement fix to pass test

* Update idiff to ignore irrelevant hyphens in path

* Update imagerepo (following docs)

* Update after review by @trexfeathers

* Add whatsnew entries

* Move whatsnew entries into correct file

* Release Docs Improvements (#3895)

* Minor phrasing change in 'Release candidate'.

* Before release deprecations.

* Whatsnew highlights section.

* Relax setup.py setup requirements (#3909)

* Updated CF saver version in User Guide and docstring (#3925)

* Updated CF saver version in User Guide and docstring

* Remove references to CF version of the loader in docstrings

* Added whatsnew

* Pin cftime<1.3.0

* Migrate to cirrus-ci (#3928)

* migrate from travis-ci to cirrus-ci

* added whatsnew entries

* ignore url for doc link check (#3929)

* whatsnew for coord default units (#3924)

* Cube._summary_coord_extra: efficiency and bugfix (#3922)

* Add Documentation Title Case Capitalization (#3940)

* Use Title Case Capitalisation for Documentation

* add whatsnew enter

* CI requirements drop pip packages (#3939)

* requirements pip to conda

* use pip install over develop

* default PY_VER to python versions

* update links (#3942)

* update links

* added s to http

* Add support for 1-d weights in collapse. (#3943)

* Remove warning for convert_units on lazy data (#3951)

* drop stickler references in docs (#3953)

* drop stickler references in docs

* remove sticker from common links

* update docs for travis-ci to cirrus-ci (#3954)

* update docs for travis-ci to cirrus-ci

* add 'travis-ci' reference locally to whatsnew

* update whatsnew comment

* docs for nox (#3955)

* docs for nox

* add titles, notices and additional detail

* review actions

* Resolve test coverage (#3947)

* test coverage for __init__ and __call__

* test coverage for metadata resolve and coverage

* partial test coverage for metadata mapping

* python 3.6 workaround for deepcopy of mock.sentinel

* test coverage for Resolve._free_mapping

* test coverage for Resolve convenience methods

* add test stub for Resolve._metadata_mapping

* fix Test__tgt_cube_position

* test coverage for shape

* test coverage for _as_compatible_cubes

* test coverage for Resolve._metadata_mapping

* test coverage for Resolve._prepare_common_dim_payload

* test coverage for Resolve._prepare_common_aux_payload

* test coverage for Resolve._prepare_points_and_bounds

* test coverage for Resolve._create_prepared_item

* test coverage for Resolve._prepare_local_payload_dim

* test coverage for Resolve._prepare_local_payload_aux

* test coverage for Resolve._prepare_local_payload_scalar + docs URL skip

* test coverage for Resolve._prepare_local_payload

* test coverage for Resolve._metadata_prepare

* added docs URL linkcheck skip

* test coverage for Resolve._prepare_factory_payload

* test coverage for Resolve._get_prepared_item

* review actions

* test coverage for Resolve.cube

* pin v3.0.0 version and whatnew date (#3956)

* update github ci checks image (#3957)

* Promote unknown units to dimensionless in aux factories (#3965)

* promote unknown to dimensionless units in aux factories

* patch aux factories to promote unknown to dimensionless units for formula terms

* add whatnew PR for entry

Co-authored-by: tkknight <[email protected]>
Co-authored-by: Zeb Nicholls <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: Jon Seddon <[email protected]>
Co-authored-by: Ruth Comer <[email protected]>
Co-authored-by: Patrick Peglar <[email protected]>
abooton pushed a commit that referenced this pull request Aug 10, 2021
* Add release highlights and pin rc version (#3898)

* Add release highlights and pin rc version

* review actions

* reorder release highlights (#3899)

Tweak release highlights

* Add whatsnew announcement (#3900)

* Fix spelling (#3903)

* Fix unit label handling (#3902)

* Add failing test of plotting

* Implement fix to pass test

* Update idiff to ignore irrelevant hyphens in path

* Update imagerepo (following docs)

* Update after review by @trexfeathers

* Add whatsnew entries

* Move whatsnew entries into correct file

* Release Docs Improvements (#3895)

* Minor phrasing change in 'Release candidate'.

* Before release deprecations.

* Whatsnew highlights section.

* Relax setup.py setup requirements (#3909)

* Updated CF saver version in User Guide and docstring (#3925)

* Updated CF saver version in User Guide and docstring

* Remove references to CF version of the loader in docstrings

* Added whatsnew

* Pin cftime<1.3.0

* Migrate to cirrus-ci (#3928)

* migrate from travis-ci to cirrus-ci

* added whatsnew entries

* ignore url for doc link check (#3929)

* whatsnew for coord default units (#3924)

* Cube._summary_coord_extra: efficiency and bugfix (#3922)

* Add Documentation Title Case Capitalization (#3940)

* Use Title Case Capitalisation for Documentation

* add whatsnew enter

* CI requirements drop pip packages (#3939)

* requirements pip to conda

* use pip install over develop

* default PY_VER to python versions

* update links (#3942)

* update links

* added s to http

* Add support for 1-d weights in collapse. (#3943)

* Remove warning for convert_units on lazy data (#3951)

* drop stickler references in docs (#3953)

* drop stickler references in docs

* remove sticker from common links

* update docs for travis-ci to cirrus-ci (#3954)

* update docs for travis-ci to cirrus-ci

* add 'travis-ci' reference locally to whatsnew

* update whatsnew comment

* docs for nox (#3955)

* docs for nox

* add titles, notices and additional detail

* review actions

* Resolve test coverage (#3947)

* test coverage for __init__ and __call__

* test coverage for metadata resolve and coverage

* partial test coverage for metadata mapping

* python 3.6 workaround for deepcopy of mock.sentinel

* test coverage for Resolve._free_mapping

* test coverage for Resolve convenience methods

* add test stub for Resolve._metadata_mapping

* fix Test__tgt_cube_position

* test coverage for shape

* test coverage for _as_compatible_cubes

* test coverage for Resolve._metadata_mapping

* test coverage for Resolve._prepare_common_dim_payload

* test coverage for Resolve._prepare_common_aux_payload

* test coverage for Resolve._prepare_points_and_bounds

* test coverage for Resolve._create_prepared_item

* test coverage for Resolve._prepare_local_payload_dim

* test coverage for Resolve._prepare_local_payload_aux

* test coverage for Resolve._prepare_local_payload_scalar + docs URL skip

* test coverage for Resolve._prepare_local_payload

* test coverage for Resolve._metadata_prepare

* added docs URL linkcheck skip

* test coverage for Resolve._prepare_factory_payload

* test coverage for Resolve._get_prepared_item

* review actions

* test coverage for Resolve.cube

* pin v3.0.0 version and whatnew date (#3956)

* update github ci checks image (#3957)

* Promote unknown units to dimensionless in aux factories (#3965)

* promote unknown to dimensionless units in aux factories

* patch aux factories to promote unknown to dimensionless units for formula terms

* add whatnew PR for entry

* Release branch prepare for v3.0.2 (#4044)

* update intersphinx mapping and matplotlib urls (#4003)

* update intersphinx mapping and matplotlib urls

* use matplotlib intersphinx where possible

* review actions

* review actions

* cirrus-ci compute credits (#4007)

* cirrus-ci conditional tasks (#4019)

* cirrus-ci conditional tasks

* use bc for bash arithmetic

* revert back to sed

* use expr

* reword

* minor documentation changes

* review actions

* prepare v3.0.2 release

* Fix test_incompatible_dimensions test (#3977)

* test_incompatible_dimensions used a ragged array for the test, which has been deprecated in numpy, and now fails if dtype is anything other than object.  This test appears to be checking that the addition of a [2x4] masked array to a [2x3] masked cube should raise a ValueError. This commit fixes the creation of `data3` object to be a [2x4] non-ragged array.

* Added entry to what's new

* Added name to core developer list :)

* Update latest.rst

Fixed space in PR macro call

* update whatsnew v3.0.2

Co-authored-by: James Penn <[email protected]>

* um_stash_source attribute improved handling (#4035)

* Modified pyke rule

* Tests added

* Black and whatsnew

* Include PR number

* Remove latest.rst

* Add what's new

* Support for py38 and Cartopy 0.19 (#4130)

* mpl 3.4.1 updates (#4087)

* replace most recent hashes (#4112)

* Corrected plot_anomaly_log_colouring for new Matplotlib linscale rules. (#4115)

* Cartopy 0.19 updates (#4128)

* Use assertArrayAllClose for sqrt test (#4118)

* using AllClose for sqrt test

* Omitting the checksum from test cml

* use ArrayAllClose (rebase reset it?)

* Iris py38 (#3976)

* support for py38

* update CI and noxfile

* enforce alphabetical xml element attribute order

* full tests for py38 + fix docs-tests

* add whatsnew entry

* update doc-strings + review actions

* Alternate xml handling routine (#29)

* all xml tests pass for nox tests-3.8

* restored docstrings

* move sort_xml_attrs

* make sort_xml_attrs a classmethod

* update sort_xml_attr doc-string

Co-authored-by: Bill Little <[email protected]>

* add jamesp to whatsnew + minor tweak

Co-authored-by: James Penn <[email protected]>

* reinstate black and nox links

* Linkcheck update (#4104)

* Updated links

* Added login remark

* Removed extra space

* change to kick cirrus

* kick cirrus

* test verbose on cirrus

* Removed test settings.

Co-authored-by: Bill Little <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: James Penn <[email protected]>
Co-authored-by: James Penn <[email protected]>
Co-authored-by: tkknight <[email protected]>

* Intersection bounds fix (replacement PR) (#4059)

* fix intersection out of bounds point

* fix intersection out of bounds point take 2

* add referencing comment

* bootstrap ci for 3.0.x (#4154)

* add cirrus-ci docker support

* wip

* wip

* wip

* wip

* wip

* add pip

* revert docker

* fix add_weekday (#32)

* fix add_weekday

* fix black link

* fix link

Co-authored-by: Ruth Comer <[email protected]>

* Tweak to speed up dask wrapping of netcdf variables (#4135)

* Use 'meta' in da.from_array to stop it sampling netcdf variables, which is quite slow.

* Fix PR number.

* Fix test.

* Review changes.

* Update docs/iris/src/whatsnew/3.0.2.rst

Co-authored-by: lbdreyer <[email protected]>

* Fb fix cube coord arithmetic (#4159)

* fix coord with cube arithmetic

* add coord arithmetic test coverage

* add a whatsnew entry

* Pp daskfix (#4141)

* Remove workaround when dask-wrapping PP data, obsoleted by #4135.

* Remove old slice testing

* Add whats new

* move whitespace?

* missing line

Co-authored-by: lbdreyer <[email protected]>

* add release date to v3.0.2 whatsnew (#4160)

* update readme logo img src and href (#4006) (#4216)

* In cube.intersection, find split cells using a tolerant equality check (#4220)

* In cube.intersection, find split cells using a tolerant equality check

* remove unused var

* Add bounds check to tests; add what's new

* Fix whats new; update version number

* Update 3.0.3.rst

Update release date in `3.0.3.rst`

* Wide cubestr fix 3v0vx v2 (#4233)

* Widen cube printout for long ancil or cell-measure names.

* Adjust result for fixed cube-units printout.

* Added whatsnew.

* Include newest whatsnew in index.

* Review: fix whatsnew structure.

* Fix initial sections display.

* Fix some typos in the cube maths docs (#4248)

* (More of) Wide cubestr fix 3v0vx v2 (#4238)

* Fix whatsnew for #4233.

* Move 'empty slicings' whatsnew entry to 3.0.2 section.

* unpin cftime (#4222)

* Test wrangling vs v3.0.x (#4249)

* test changes

* add awol init

* rename system test cases

* fix PartialDateTime tests

* fix typo

* add whatsnew

* Fix mergeback PR #4035

* Fix mergeback PR #4035 tests

* Update mergeback nox conda-lock files

Co-authored-by: tkknight <[email protected]>
Co-authored-by: Zeb Nicholls <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: Jon Seddon <[email protected]>
Co-authored-by: Ruth Comer <[email protected]>
Co-authored-by: Patrick Peglar <[email protected]>
Co-authored-by: James Penn <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: James Penn <[email protected]>
Co-authored-by: Ruth Comer <[email protected]>
Co-authored-by: lbdreyer <[email protected]>
Co-authored-by: lbdreyer <[email protected]>
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3 participants