Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Removed non-int arguments for linspace num parameter #3655

Merged
merged 1 commit into from
Feb 11, 2020

Conversation

trexfeathers
Copy link
Contributor

Inputting non-int num arguments for numpy.linspace has been deprecated since Numpy v1.12.

Support has now been entirely removed, and a few of Iris' tests were deliberately leaning on Numpy's attempted int() conversion. These tests have been fixed.

@lbdreyer
Copy link
Member

Thanks @trexfeathers !

@lbdreyer lbdreyer merged commit 4410e56 into SciTools:master Feb 11, 2020
@trexfeathers trexfeathers deleted the numpy_1_18_fixes branch February 17, 2020 14:22
MoseleyS added a commit to MoseleyS/iris that referenced this pull request Mar 6, 2020
* master:
  Remove TestGribMessage (SciTools#3672)
  Removed iris.tests.integration.test_grib_load and related CML files. (SciTools#3670)
  Removed grib-specific test to iris-grib. (SciTools#3671)
  Fixed asv project name to 'scitools-iris'. (SciTools#3660)
  Remove cube iter (SciTools#3656)
  Remove test_grib_save.py (SciTools#3669)
  Remove test_grib2 integration tests (SciTools#3664)
  Remove uri callback test which is moved to iris-grib (SciTools#3665)
  2v4 mergeback picks (SciTools#3668)
  Remove test_grib_save_rules.py which has been moved to iris-grib (SciTools#3666)
  Removed ununused skipIf. (SciTools#3632)
  Remove grib-specific test. (SciTools#3663)
  Remove obsolete test. (SciTools#3662)
  remove redundant tests (SciTools#3650)
  Fixed tests since Numpy 1.18 deprecation of non-int num arguments for linspace. (SciTools#3655)
trexfeathers added a commit that referenced this pull request Mar 18, 2020
* Fixed tests since Numpy 1.18 deprecation of non-int num arguments for linspace. (#3655)

* remove redundant tests (#3650)

* Remove obsolete test. (#3662)

* Remove grib-specific test. (#3663)

* Removed ununused skipIf. (#3632)

* Remove test_grib_save_rules.py which has been moved to iris-grib (#3666)

* 2v4 mergeback picks (#3668)

* Stop PPDataProxy accessing the file when no data is needed. (#3659)

* Add 2.4 whatsnew into full whatsnew list.

Co-authored-by: Martin Yeo <[email protected]>

* Remove uri callback test which is moved to iris-grib (#3665)

* Remove test_grib2 integration tests (#3664)

* Remove test_grib_save.py (#3669)

* Remove cube iter (#3656)

* Fixed asv project name to 'scitools-iris'. (#3660)

* Removed grib-specific test to iris-grib. (#3671)

* Removed iris.tests.integration.test_grib_load and related CML files. (#3670)

* Remove TestGribMessage (#3672)

* Switched use of datetime.weekday() to datetime.dayofwk. (#3687)

* New image hashes for mpl 3x2 (#3682)

* New image hash for iris.test.test_plot.TestSymbols.test_cloud_cover with matplotlib 3.2.0.

* Further images changes for mpl3x2.

* Yet more updated image results.

* Correct and improve dev-guide section on fixing graphics-tests. (#3683)

* Correct and improve dev-guide section on fixing graphics-tests.

* Review changes + general rethink.

* Reduce duplication between 'graphics-tests' and general 'tests' page.

* Update docs/iris/src/developers_guide/graphics_tests.rst

Co-Authored-By: Martin Yeo <[email protected]>

* Update docs/iris/src/developers_guide/graphics_tests.rst

Co-Authored-By: Martin Yeo <[email protected]>

* Update docs/iris/src/developers_guide/graphics_tests.rst

Co-Authored-By: Martin Yeo <[email protected]>

* Update docs/iris/src/developers_guide/graphics_tests.rst

Co-Authored-By: Martin Yeo <[email protected]>

* Update docs/iris/src/developers_guide/graphics_tests.rst

Co-Authored-By: Martin Yeo <[email protected]>

Co-authored-by: Martin Yeo <[email protected]>

Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: Bill Little <[email protected]>
Co-authored-by: lbdreyer <[email protected]>
Co-authored-by: Jon Seddon <[email protected]>
bjlittle pushed a commit to bjlittle/iris that referenced this pull request Jun 25, 2020
bjlittle pushed a commit to bjlittle/iris that referenced this pull request Jun 25, 2020
@bjlittle bjlittle mentioned this pull request Jun 25, 2020
26 tasks
tkknight pushed a commit to tkknight/iris that referenced this pull request Jun 29, 2020
lbdreyer pushed a commit that referenced this pull request Jul 3, 2020
* add lenient infra-structure

* add metadata lenient __eq__ support

* complete __eq__, combine and difference support

* explicit inherited lenient_service + support equal convenience

* fix attributes difference + lenient kwargs

* make lenient public + minor tidy

* rename MetadataManagerFactory to metadata_manager_factory

* extend lenient_client decorator to support services registration

* add lenient test coverage

* purge qualname usage in metadata.py

* support global enable for lenient services

* support partial mapping metadata assignment

* purge Lenient.__setattr__ from api

* add BaseMetadata compare test coverage

* metadata rationalisation

* add BaseMetadata difference test coverage

* added context manager ephemeral comment clarification

* add BaseMetadata __ne__ test coverage

* standardise lenient decorator closure names

* add BaseMetadata equal test coverage

* half dunder context

* add AncillaryVariableMetadata test coverage

* add additional AncillaryVariableMetadata test coverage

* add CellMeasureMetadata test coverage

* Clarify lenient_service operation + simplify code.

* add CoordMetadata test coverage

* add CubeMetadata test coverage

* metadata tests use self.cls

* fix typo

* fix context manager ephemeral services

* add logging

* Pin pillow to make graphics tests work again. (#3630)

* Fixed tests since Numpy 1.18 deprecation of non-int num arguments for linspace. (#3655)

* Switched use of datetime.weekday() to datetime.dayofwk. (#3687)

* New image hashes for mpl 3x2 (#3682)

* New image hash for iris.test.test_plot.TestSymbols.test_cloud_cover with matplotlib 3.2.0.

* Further images changes for mpl3x2.

* Yet more updated image results.

* fix sentinel uniqueness test failure

* remove redundant cdm mapping test

* difference returns None for no difference

* protect Lenient and LENIENT private

* privitise lenient framework and add API veneer

* add explicit maths feature default

* review actions

* review actions

* trexfeathers review actions

* stephenworsley review actions

Co-authored-by: Patrick Peglar <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
bjlittle added a commit to bjlittle/iris that referenced this pull request Aug 14, 2020
* add lenient infra-structure

* add metadata lenient __eq__ support

* complete __eq__, combine and difference support

* explicit inherited lenient_service + support equal convenience

* fix attributes difference + lenient kwargs

* make lenient public + minor tidy

* rename MetadataManagerFactory to metadata_manager_factory

* extend lenient_client decorator to support services registration

* add lenient test coverage

* purge qualname usage in metadata.py

* support global enable for lenient services

* support partial mapping metadata assignment

* purge Lenient.__setattr__ from api

* add BaseMetadata compare test coverage

* metadata rationalisation

* add BaseMetadata difference test coverage

* added context manager ephemeral comment clarification

* add BaseMetadata __ne__ test coverage

* standardise lenient decorator closure names

* add BaseMetadata equal test coverage

* half dunder context

* add AncillaryVariableMetadata test coverage

* add additional AncillaryVariableMetadata test coverage

* add CellMeasureMetadata test coverage

* Clarify lenient_service operation + simplify code.

* add CoordMetadata test coverage

* add CubeMetadata test coverage

* metadata tests use self.cls

* fix typo

* fix context manager ephemeral services

* add logging

* Pin pillow to make graphics tests work again. (SciTools#3630)

* Fixed tests since Numpy 1.18 deprecation of non-int num arguments for linspace. (SciTools#3655)

* Switched use of datetime.weekday() to datetime.dayofwk. (SciTools#3687)

* New image hashes for mpl 3x2 (SciTools#3682)

* New image hash for iris.test.test_plot.TestSymbols.test_cloud_cover with matplotlib 3.2.0.

* Further images changes for mpl3x2.

* Yet more updated image results.

* fix sentinel uniqueness test failure

* remove redundant cdm mapping test

* difference returns None for no difference

* protect Lenient and LENIENT private

* privitise lenient framework and add API veneer

* add explicit maths feature default

* review actions

* review actions

* trexfeathers review actions

* stephenworsley review actions

Co-authored-by: Patrick Peglar <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
abooton pushed a commit that referenced this pull request Aug 14, 2020
* PI-3478: Common metadata API (#3583)

* common metadata api

* rationalise _cube_coord_common into common

* move state into metadata

* MetadataFactory test coverage

* temporarily pin back iris-grib

* test coverage for iris.common.metadata._BaseMeta

* test coverage for iris.common.mixin.LimitedAttributeDict

* remove temporary iris-grib pin

* review actions

* Update lib/iris/tests/unit/common/metadata/test_BaseMetadata.py

Co-Authored-By: lbdreyer <[email protected]>

* [FB] [PI-3478] Lenient metadata (#3739)

* add lenient infra-structure

* add metadata lenient __eq__ support

* complete __eq__, combine and difference support

* explicit inherited lenient_service + support equal convenience

* fix attributes difference + lenient kwargs

* make lenient public + minor tidy

* rename MetadataManagerFactory to metadata_manager_factory

* extend lenient_client decorator to support services registration

* add lenient test coverage

* purge qualname usage in metadata.py

* support global enable for lenient services

* support partial mapping metadata assignment

* purge Lenient.__setattr__ from api

* add BaseMetadata compare test coverage

* metadata rationalisation

* add BaseMetadata difference test coverage

* added context manager ephemeral comment clarification

* add BaseMetadata __ne__ test coverage

* standardise lenient decorator closure names

* add BaseMetadata equal test coverage

* half dunder context

* add AncillaryVariableMetadata test coverage

* add additional AncillaryVariableMetadata test coverage

* add CellMeasureMetadata test coverage

* Clarify lenient_service operation + simplify code.

* add CoordMetadata test coverage

* add CubeMetadata test coverage

* metadata tests use self.cls

* fix typo

* fix context manager ephemeral services

* add logging

* Pin pillow to make graphics tests work again. (#3630)

* Fixed tests since Numpy 1.18 deprecation of non-int num arguments for linspace. (#3655)

* Switched use of datetime.weekday() to datetime.dayofwk. (#3687)

* New image hashes for mpl 3x2 (#3682)

* New image hash for iris.test.test_plot.TestSymbols.test_cloud_cover with matplotlib 3.2.0.

* Further images changes for mpl3x2.

* Yet more updated image results.

* fix sentinel uniqueness test failure

* remove redundant cdm mapping test

* difference returns None for no difference

* protect Lenient and LENIENT private

* privitise lenient framework and add API veneer

* add explicit maths feature default

* review actions

* review actions

* trexfeathers review actions

* stephenworsley review actions

Co-authored-by: Patrick Peglar <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>

* [FB] [PI-3478] Lenient cube arithmetic (#3774)

* initial cube arithmetic

* support in-place cube resolve

* fix non in-place broadcasting

* remove temporary resolve scenario test

* lenient/strict support for attributes dicts with numpy arrays

* lenient/strict treatment of scalar coordinates

* strict points/bounds matching

* lenient/strict prepare local dim/aux/scalar coordinates

* support extended broadcasting

* always raise exception on points/bounds mismatch

* ignore scalar points/bounds mismatches, lenient only

* remove todos

* tidy logger debugs

* qualify src/tgt cube references in debug

* Numpy rounding fix (#3758)

ensure rounding is numpy like (maintains type)

* avoid unittest.mock.sentinel copy issue

* fast load np.int32

* fix cube maths doctest

* fix iris.common.resolve logging configuration

* fix prepare points/bounds + extra metadata cml

* support mapping reversal based on free dims

* var_name fix for lenient equality

* add support for DimCoordMetadata

* fix circular flag + support CoordMetadata and DimCoordMetadata exchange

* fix circular issue for concatenate DimCoord->AuxCoord demotion

* fix concatenate._CubeSignature sorted

* minor tweaks

* keep lenient_client private in maths

* tidy maths

* tidy iris.analysis.maths.IFunc

* refactor IFunc test

* polish in-place support

* tidy metadata_resolve

Co-authored-by: stephenworsley <[email protected]>

* rebase master fix-up for cube arithmetic

* add missing new dependency to readthedocs.yml requirements

Co-authored-by: lbdreyer <[email protected]>
Co-authored-by: Patrick Peglar <[email protected]>
Co-authored-by: Martin Yeo <[email protected]>
Co-authored-by: stephenworsley <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants