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# SciMLWorkshop | ||
# SciMLWorkshop: Workshop Materials for Training in Scientific Computing and Scientific Machine Learning (SciML) | ||
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These exercises teach common workflows which involve SciML's tools like | ||
DifferentialEquations.jl, ModelingToolkit.jl DiffEqFlux.jl, and the connections to parts | ||
like stochastic differential equations and Bayesian estimation. | ||
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## Difficulty Levels | ||
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The designation (B) is for "Beginner", meaning that a user new to the package | ||
should feel comfortable trying this exercise. An exercise designated (I) is | ||
for "Intermediate", meaning the user may want to have some previous background | ||
in DifferentialEquations.jl or try some (B) exercises first. The additional | ||
(E) designation is for "Experienced", which are portions of exercises which may | ||
take some work. | ||
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## Overview | ||
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The exercises are described as follows: | ||
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- Exercise 1 is solving a simple stiff ordinary differential equation. This is an | ||
introductory exercise to get users acquainted with the syntax. | ||
- Exercise 2 takes the user through solving a stiff ordinary differential equation | ||
and using the ModelingToolkit.jl to automatically convert the function to a | ||
symbolic form to derive the analytical Jacobian to speed up the solver. The | ||
same biological system is then solved with stochasticity, utilizing | ||
EnsembleProblems to understand 95% bounds on the solution. Finally, | ||
probabilistic programming is employed to perform Bayesian parameter estimation | ||
of the parameters against data. | ||
- Exercise 3 takes the user through defining hybrid delay differential equation, | ||
that is a differential equation with events, and using differentiable programming | ||
techniques (automatic differentiation) to to perform gradient-based parameter | ||
estimation. | ||
- Exercise 4 takes the user through differential-algebraic equation (DAE) | ||
modeling, the concept of index, and using both mass-matrix and implicit | ||
ODE representations. This will require doing a bit of math, but the student | ||
will understand how to change their equations to make their DAE numerically | ||
easier for the integrators. | ||
- Exercise 5 has one build an acausal model, a DAE system through a component-based | ||
modeling approach. Using a tutorial model of an RC circuit (resistor and capacitor) | ||
plus some information about inductors, the user then builds new ModelingToolkit | ||
components for an inductor and generates an RLC circuit to be simulated. | ||
- Exercise 6 takes the user through optimizing a PDE solver, utilizing | ||
automatic sparsity pattern recognition, automatic conversion of numerical | ||
codes to symbolic codes for analytical construction of the Jacobian, | ||
preconditioned GMRES, and setting up a solver for IMEX and GPUs, and compute | ||
adjoints of PDEs. | ||
- Exercise 7 focuses on a chaotic orbit, utilizing parallel ensembles across | ||
supercomputers and GPUs to quickly describe phase space. | ||
- Exercise 8 takes the user through training a neural stochastic differential | ||
equation, using GPU-accleration and adjoints through Flux.jl's neural | ||
network framework to build efficient training codes. | ||
- Exercise 9 is a deep dive into controls analysis on nonlinear models. The | ||
user starts by building an acausal model of a DC motor, which is augmented | ||
with a PI-controller that is tuned to control the actions of the motor. | ||
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This exercise worksheet is meant to be a living document leading new users through | ||
a deep dive of the SciML feature set. If you further suggestions | ||
or want to contribute new problems, please | ||
[open an issue or PR at the SciMLWorkshop.jl repository](https://github.com/SciML/SciMLWorkshop.jl). |