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bump Jumps to Catalyst v14, MTK v9 #1118

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merged 4 commits into from
Nov 14, 2024

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vyudu
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@vyudu vyudu commented Nov 8, 2024

Trying to bump Jumps to new versions

@ChrisRackauckas
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The builder is currently on v1.10. Change the manifest to match.

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vyudu commented Nov 13, 2024

@ChrisRackauckas is this good to merge?

@ChrisRackauckas
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Mendes still has an issue?

Plot solutions by each method

methods = (Direct(), FRM(), SortingDirect(), NRM(), DirectCR(), RSSA(), RSSACR(), Coevolve(), RDirect())
shortlabels = [string(leg)[15:end-2] for leg in methods]
tf      = 10.0 * jprob.tstop
prob    = DiscreteProblem(rn, jprob.u0, (0.0, tf), jprob.rates)
varlegs = ["A_P" "A_bound_P" "A_unbound_P" "RLA_P"]
@variables t S7(t) S8(t) S9(t)
varsyms = [
    [S7,S8,S9],
    [S9],
    [S7,S8],
    [S7]
]
varidxs = []
for vars in varsyms
    push!(varidxs, [findfirst(isequal(sym),rn.states) for sym in vars])
end
Error: ArgumentError: System ##ReactionSystem#260: variable states does not
 exist

@ChrisRackauckas
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I put a commit in that should handle that.

@ChrisRackauckas ChrisRackauckas merged commit a12642c into SciML:master Nov 14, 2024
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@vyudu vyudu deleted the bump-from-master branch November 14, 2024 14:53
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2 participants