Deep learning-based classification of the mouse estrous cycle stages, K. Sano and etal, 2020, Scientific Reports.

https://www.nature.com/articles/s41598-020-68611-0

SECREIT

Mouse Estrous Cycle Estimation

Prerequisites

• Python 3.6
• numpy 1.19.1
• opencv-python 4.1.1
• keras (tensorflow backend)== 2.2.4 (NOT 2.3)
• tensorflow 1.13.1

Overview

Model AUC (Performance)

SECREIT correctly classified competitive to two professionals

diestrus stage (D): 0.982

estrus stage (E): 0.979

proestrus stage (P): 0.962

Weight parameter

https://opac.ll.chiba-u.jp/da/curator/108041/weights.hdf5

Dataset

Example of file name

"D_a_14_e1_Auto2_train.png"
①　D: Estrous Stage. When the estrous stage is intermediate class, we described it using "_", such as "D_E".
②　a_14_e1: image id
③　Auto2: Name of Experiment. Auto2 and Auto3 was used for trainig. Auto1 was for validation and Auto4 is for test.

Dataset download

https://opac.ll.chiba-u.jp/da/curator/108041/D_part1.zip

https://opac.ll.chiba-u.jp/da/curator/108041/D_part2.zip

https://opac.ll.chiba-u.jp/da/curator/108041/D_part3.zip

https://opac.ll.chiba-u.jp/da/curator/108041/E.zip

https://opac.ll.chiba-u.jp/da/curator/108041/P.zip