This project implements a web application for real-time detection and segmentation of microbial cells using the YOLOv8 deep learning model.
Microbial cell detection is essential in various fields, including environmental monitoring, public health, and biotechnology. This application provides a user-friendly interface for researchers and practitioners to quickly and accurately identify microbial cells in images.
- Utilizes YOLOv8 for real-time object detection and segmentation.
- Web-based interface for easy interaction and visualization.
- Supports uploading of images containing microbial cells.
- Displays segmented regions and precise locations of detected cells.
- Provides distribution analysis of identified microbial cells.
- Clone the repository:
git clone https://github.com/SYED-M-HUSSAIN/Microbial-cell-segmentation.git
- Install the required dependencies:
pip install -r requirements.txt
- Run the main file:
streamlit run app.py
.
βββ README.md # Project documentation
βββ app.py # Main application script
βββ best.pt # Pre-trained YOLOv8 model
βββ image_utils.py # Utility functions for image processing
βββ segmentation.py # Script for segmentation functionality
βββ sidebar.py # Script for sidebar components
βββ Images # Directory to store uploaded images
β βββ uploaded_image.jpg # Example uploaded image
βββ .gitignore # Git ignore file
βββ requirements.txt # Dependencies
https://bio200.streamlit.app/